Isolation and characterization of a novel linear-plasmid phage from the sediment of the Mariana Trench

Yali Hao; Siyuan Wang; Mujie Zhang; Qingxue Tang; Canxing Meng; Liping Wang; Qilian Fan; Yaxian Yan; Xiang Xiao; Huahua Jian

doi:10.1016/j.virs.2022.01.022

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Volume 37 Issue 2

April 2022

Citation: Yali Hao, Siyuan Wang, Mujie Zhang, Qingxue Tang, Canxing Meng, Liping Wang, Qilian Fan, Yaxian Yan, Xiang Xiao, Huahua Jian. Isolation and characterization of a novel linear-plasmid phage from the sediment of the Mariana Trench .VIROLOGICA SINICA, 2022, 37(2) : 311-313. http://dx.doi.org/10.1016/j.virs.2022.01.022

Isolation and characterization of a novel linear-plasmid phage from the sediment of the Mariana Trench

Yali Hao ^a ,
Siyuan Wang ^a ,
Mujie Zhang ^a ,
Qingxue Tang ^a ,
Canxing Meng ^a ,
Liping Wang ^b ,
Qilian Fan ^a ,
Yaxian Yan ^c ,
Xiang Xiao ^a,d ,
Huahua Jian ^{a,d
,,}

a State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China
b Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, 361005, China
c Shanghai Key Laboratory of Veterinary Biotechnology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
d Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai, 519082, China

Corresponding author: Huahua Jian, jiandy@sjtu.edu.cn
Received Date: 23 June 2021
Accepted Date: 20 October 2021
Available online: 28 January 2022

Abstract

Highlights
1. HMP1 is the first bacteriophage that was isolated from hadal sediment, the water depth at which HMP1 was isolated is the highest on record up to now.
2. The isolation of HMP1 extends the habitat of linear plasmid phages from the surface to the deep ocean.
3. The genomic and morphological features of HMP1 provide hints with regard to the vertical exchange of viral communities in the ocean.
4. HMP1 and Halomonas sp. MT08-1 contribute a useful phage-host system for in-depth analysis of the life strategy of viruses and their interactions with bacterial hosts in extreme hadal environments.

Electronic Supplementary Material

10.1016j.virs.2022.01.022-ESM.docx
References
1. Adriaenssens, E.M., Brister, J.R., 2017. How to name and classify your phage: an informal guide. Viruses 9, 70.
2. Howard-Varona, C., Hargreaves, K.R., Abedon, S.T., Sullivan, M.B., 2017. Lysogeny in nature: mechanisms, impact and ecology of temperate phages. ISME J. 11, 1511–1520.
3. Hurwitz, B.L., Sullivan, M.B., 2013. The Pacific Ocean virome (POV): a marine viral metagenomic dataset and associated protein clusters for quantitative viral ecology. PLoS One 8, e57355.
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5. Jian, H., Yi, Y., Wang, J., Hao, Y., Zhang, M., Wang, S., Meng, C., Zhang, Y., Jing, H., Wang, Y., Xiao, X., 2021. Diversity and distribution of viruses inhabiting the deepest ocean on Earth. ISME J. 15, 3094–3110.
6. Mobberley, J.M., Authement, R.N., Segall, A.M., Paul, J.H., 2008. The temperate marine phage fhap-1 of Halomonas aquamarina possesses a linear plasmid-like prophage genome. J. Virol. 82, 6618–6630.
7. Ravin, N.V., 2003. Mechanisms of replication and telomere resolution of the linear plasmid prophage N15. FEMS Microbiol. Lett. 221, 1–6.
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9. Ravin, N.V., 2015. Replication and maintenance of linear phage-plasmid N15. Microbiol. Spectr. 3. PLAS-0032-2014.
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12. Yoshida, M., Yoshida-Takashima, Y., Nunoura, T., Takai, K., 2015. Identification and genomic analysis of temperate Pseudomonas bacteriophage PstS-1 from the Japan trench at a depth of 7000 m. Res. Microbiol. 166, 668–676.
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Isolation and characterization of a novel linear-plasmid phage from the sediment of the Mariana Trench

Corresponding author: Huahua Jian, jiandy@sjtu.edu.cn

a State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China
b Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, 361005, China
c Shanghai Key Laboratory of Veterinary Biotechnology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
d Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai, 519082, China

Received Date: 23 June 2021
Accepted Date: 20 October 2021

Abstract: Highlights
1. HMP1 is the first bacteriophage that was isolated from hadal sediment, the water depth at which HMP1 was isolated is the highest on record up to now.
2. The isolation of HMP1 extends the habitat of linear plasmid phages from the surface to the deep ocean.
3. The genomic and morphological features of HMP1 provide hints with regard to the vertical exchange of viral communities in the ocean.
4. HMP1 and Halomonas sp. MT08-1 contribute a useful phage-host system for in-depth analysis of the life strategy of viruses and their interactions with bacterial hosts in extreme hadal environments.