-
Arango, D., Sturgill, D., Alhusaini, N., Dillman, A.A., Sweet, T.J., Hanson, G., Hosogane, M., Sinclair, W.R., Nanan, K.K., Mandler, M.D., Fox, S.D., Zengeya, T.T., Andresson, T., Meier, J.L., Coller, J., Oberdoerffer, S., 2018. Acetylation of cytidine in mRNA promotes translation efficiency. Cell. 175, 1872-1886 e1824.
-
Bohnsack, K.E., Hobartner, C., Bohnsack, M.T., 2019. Eukaryotic 5-methylcytosine (m(5)C) RNA methyltransferases: mechanisms, cellular functions, and links to disease. Genes. 10, 102.
-
Cardosa, M.J., Perera, D., Brown, B.A., Cheon, D., Chan, H.M., Chan, K.P., Cho, H., McMinn, P., 2003. Molecular epidemiology of human enterovirus 71 strains and recent outbreaks in the Asia-Pacific region: comparative analysis of the VP1 and VP4 genes. Emerg. Infect. Dis. 9, 461-468.
-
Chen, B., Sumi, A., Toyoda, S., Hu, Q., Zhou, D., Mise, K., Zhao, J., Kobayashi, N., 2015. Time series analysis of reported cases of hand, foot, and mouth disease from 2010 to 2013 in Wuhan, China. BMC Infect. Dis. 15, 495.
-
Chen, X., Li, A., Sun, B.F., Yang, Y., Han, Y.N., Yuan, X., Chen, R.X., Wei, W.S., Liu, Y., Gao, C.C., Chen, Y.S., Zhang, M., Ma, X.D., Liu, Z.W., Luo, J.H., Lyu, C., Wang, H.L., Ma, J., Zhao, Y.L., Zhou, F.J., Huang, Y., Xie, D., Yang, Y.G., 2019. 5-methylcytosine promotes pathogenesis of bladder cancer through stabilizing mRNAs. Nat. Cell Biol. 21, 978-990.
-
Chen, Y., Yang, W., Zhao, Y., Yang, Y., 2021. Dynamic transcriptomic m(5) C and its regulatory role in RNA processing. Wiley Interdiscip Rev RNA. 12, e1639.
-
Courtney, D.G., Kennedy, E.M., Dumm, R.E., Bogerd, H.P., Tsai, K., Heaton, N.S., Cullen, B.R., 2017. Epitranscriptomic enhancement of influenza A virus gene expression and replication. Cell Host Microbe. 22, 377-386 e375.
-
Courtney, D.G., Chalem, A., Bogerd, H.P., Law, B.A., Kennedy, E.M., Holley, C.L., Cullen, B.R., 2019a. Extensive epitranscriptomic methylation of A and C residues on murine leukemia virus transcripts enhances viral gene expression. mBio. 10, e01209-19.
-
Courtney, D.G., Tsai, K., Bogerd, H.P., Kennedy, E.M., Law, B.A., Emery, A., Swanstrom, R., Holley, C.L., Cullen, B.R., 2019b. Epitranscriptomic addition of m(5)C to HIV-1 transcripts regulates viral gene expression. Cell Host Microbe. 26, 217-227 e216.
-
Dawson, M.A., Kouzarides, T., 2012. Cancer epigenetics: from mechanism to therapy. Cell. 150, 12-27.
-
Deng, L., Kumar, J., Rose, R., McIntyre, W., Fabris, D., 2022. Analyzing RNA posttranscriptional modifications to decipher the epitranscriptomic code. Mass Spectrom. Rev. e21798.
-
Ding, S., Liu, H., Liu, L., Ma, L., Chen, Z., Zhu, M., Liu, L., Zhang, X., Hao, H., Zuo, L., Yang, J., Wu, X., Zhou, P., Huang, F., Zhu, F., Guan, W., 2024. Epigenetic addition of m5C to HBV transcripts promotes viral replication and evasion of innate antiviral responses. Cell Death Dis. 15, 39.
-
Eckwahl, M., Xu, R., Michalkiewicz, J., Zhang, W., Patel, P., Cai, Z., Pan, T., 2020. 5-Methylcytosine RNA modifications promote retrovirus replication in an ALYREF reader protein-dependent manner. J. Virol. 94, e00544-20.
-
Feng, J., Xu, T., He, M., Li, J., Yao, P., Ma, C., Yang, S., Xu, Z., Yan, K., Chen, X., Wang, H., Liu, J., Zeng, C., Xia, Y., Yan, H., Zhou, L., Chen, Y., 2023. NSUN2-mediated m5C modification of HBV RNA positively regulates HBV replication. PLoS Pathog. 19, e1011808.
-
Feng, M., Xie, X., Han, G., Zhang, T., Li, Y., Li, Y., Yin, R., Wang, Q., Zhang, T., Wang, P., Hu, J., Cheng, Y., Gao, Z., Wang, J., Chang, J., Cui, M., Gao, K., Chai, J., Liu, W., Guo, C., Li, S., Liu, L., Zhou, F., Chen, J., Zhang, H., 2021. YBX1 is required for maintaining myeloid leukemia cell survival by regulating BCL2 stability in an m6A-dependent manner. Blood. 138, 71-85.
-
Gao, Y., Fang, J., 2021. RNA 5-methylcytosine modification and its emerging role as an epitranscriptomic mark. RNA Biol. 18, 117-127.
-
Hao, H., Hao, S., Chen, H., Chen, Z., Zhang, Y., Wang, J., Wang, H., Zhang, B., Qiu, J., Deng, F., Guan, W., 2019. N6-methyladenosine modification and METTL3 modulate enterovirus 71 replication. Nucleic Acids Res. 47, 362-374.
-
Hao, H., Liu, W., Miao, Y., Ma, L., Yu, B., Liu, L., Yang, C., Zhang, K., Chen, Z., Yang, J., Zheng, Z., Zhang, B., Deng, F., Gong, P., Yuan, J., Hu, Z., Guan, W., 2022. N4-acetylcytidine regulates the replication and pathogenicity of enterovirus 71. Nucleic Acids Res. 50, 9339-9354.
-
Hao, S., Zhang, J., Chen, Z., Xu, H., Wang, H., Guan, W., 2017. Alternative polyadenylation of human bocavirus at its 3' end is regulated by multiple elements and affects capsid expression. J. Virol. 91, e02026-16.
-
Huang, F., Feng, Y., Peterlin, B.M., Fujinaga, K., 2022. P-TEFb is degraded by Siah1/2 in quiescent cells. Nucleic Acids Res. 50, 5000-5013.
-
Hussain, S., Sajini, A.A., Blanco, S., Dietmann, S., Lombard, P., Sugimoto, Y., Paramor, M., Gleeson, J.G., Odom, D.T., Ule, J., Frye, M., 2013. NSun2-mediated cytosine-5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs. Cell Rep. 4, 255-261.
-
Imam, H., Kim, G.W., Siddiqui, A., 2020. Epitranscriptomic(N6-methyladenosine) modification of viral RNA and virus-host interactions. Front. Cell. Infect. Microbiol. 10, 584283.
-
Kennedy, E.M., Bogerd, H.P., Kornepati, A.V., Kang, D., Ghoshal, D., Marshall, J.B., Poling, B.C., Tsai, K., Gokhale, N.S., Horner, S.M., Cullen, B.R., 2016. Posttranscriptional m(6)A editing of HIV-1 mRNAs enhances viral gene expression. Cell Host Microbe. 19, 675-685.
-
Kim, D., Lee, J.Y., Yang, J.S., Kim, J.W., Kim, V.N., Chang, H., 2020. The architecture of SARS-CoV-2 transcriptome. Cell. 181, 914-921 e910.
-
Li, N., Hui, H., Bray, B., Gonzalez, G.M., Zeller, M., Anderson, K.G., Knight, R., Smith, D., Wang, Y., Carlin, A.F., Rana, T.M., 2021. METTL3 regulates viral m6A RNA modification and host cell innate immune responses during SARS-CoV-2 infection. Cell Rep. 35, 109091.
-
Lichinchi, G., Gao, S., Saletore, Y., Gonzalez, G.M., Bansal, V., Wang, Y., Mason, C.E., Rana, T.M., 2016. Dynamics of the human and viral m(6)A RNA methylomes during HIV-1 infection of T cells. Nat Microbiol. 1, 16011.
-
Lin, J.Y., Li, M.L., Huang, P.N., Chien, K.Y., Horng, J.T., Shih, S.R., 2008. Heterogeneous nuclear ribonuclear protein K interacts with the enterovirus 71 5' untranslated region and participates in virus replication. J. Gen. Virol. 89, 2540-2549.
-
Liu, Y., Zheng, Z., Shu, B., Meng, J., Zhang, Y., Zheng, C., Ke, X., Gong, P., Hu, Q., Wang, H., 2016. SUMO modification stabilizes enterovirus 71 polymerase 3D to facilitate viral replication. J. Virol. 90, 10472-10485.
-
Lopata, A., Kniss, A., Lohr, F., Rogov, V.V., Dotsch, V., 2020. Ubiquitination in the ERAD process. Int. J. Mol. Sci. 21, 5369.
-
Lv, X., Liu, X., Zhao, M., Wu, H., Zhang, W., Lu, Q., Chen, X., 2021. RNA methylation in systemic lupus erythematosus. Front. Cell Dev. Biol. 9, 696559.
-
Majumder, K., Morales, A.J., 2021. Utilization of host cell chromosome conformation by viral pathogens: knowing when to hold and when to fold. Front. Immunol. 12, 633762.
-
Meyer, K.D., 2019. m(6)A-mediated translation regulation. Biochim Biophys Acta Gene Regul Mech. 1862, 301-309.
-
Motorin, Y., Helm, M., 2011. RNA nucleotide methylation. Wiley Interdiscip Rev RNA. 2, 611-631.
-
Pathinayake, P.S., Hsu, A.C., Wark, P.A., 2015. Innate immunity and immune evasion by enterovirus 71. Viruses. 7, 6613-6630.
-
Reid, R., Greene, P.J., Santi, D.V., 1999. Exposition of a family of RNA m(5)C methyltransferases from searching genomic and proteomic sequences. Nucleic Acids Res. 27, 3138-3145.
-
Roundtree, I.A., Evans, M.E., Pan, T., He, C., 2017. Dynamic RNA modifications in gene expression regulation. Cell. 169, 1187-1200.
-
Schumann, U., Zhang, H.N., Sibbritt, T., Pan, A., Horvath, A., Gross, S., Clark, S.J., Yang, L., Preiss, T., 2020. Multiple links between 5-methylcytosine content of mRNA and translation. BMC Biol. 18, 40.
-
Shi, H., Wei, J., He, C., 2019. Where, when, and how: context-dependent functions of RNA methylation writers, readers, and erasers. Mol Cell. 74, 640-650.
-
Song, P., Tayier, S., Cai, Z., Jia, G., 2021. RNA methylation in mammalian development and cancer. Cell Biol. Toxicol. 37, 811-831.
-
Srinivas, K.P., Depledge, D.P., Abebe, J.S., Rice, S.A., Mohr, I., Wilson, A.C., 2021. Widespread remodeling of the m(6)A RNA-modification landscape by a viral regulator of RNA processing and export. Proc Natl Acad Sci U S A. 118, e2104805118.
-
Sweeney, T.R., Abaeva, I.S., Pestova, T.V., Hellen, C.U., 2014. The mechanism of translation initiation on Type 1 picornavirus IRESs. EMBO J. 33, 76-92.
-
Tsai, K., Jaguva Vasudevan, A.A., Martinez Campos, C., Emery, A., Swanstrom, R., Cullen, B.R., 2020. Acetylation of cytidine residues boosts HIV-1 gene expression by increasing viral RNA stability. Cell Host Microbe. 28, 306-312.e306.
-
Wang, T., Kong, S., Tao, M., Ju, S., 2020. The potential role of RNA N6-methyladenosine in Cancer progression. Mol. Cancer. 19, 88.
-
Wiener, D., Schwartz, S., 2021. The epitranscriptome beyond m(6)A. Nat. Rev. Genet. 22, 119-131.
-
Wu, L., Candille, S.I., Choi, Y., Xie, D., Jiang, L., Li-Pook-Than, J., Tang, H., Snyder, M., 2013. Variation and genetic control of protein abundance in humans. Nature. 499, 79-82.
-
Xiao, X., Qi, J., Lei, X., Wang, J., 2019. Interactions between enteroviruses and the inflammasome: new insights into viral pathogenesis. Front. Microbiol. 10, 321.
-
Yang, X., Yang, Y., Sun, B.F., Chen, Y.S., Xu, J.W., Lai, W.Y., Li, A., Wang, X., Bhattarai, D.P., Xiao, W., Sun, H.Y., Zhu, Q., Ma, H.L., Adhikari, S., Sun, M., Hao, Y.J., Zhang, B., Huang, C.M., Huang, N., Jiang, G.B., Zhao, Y.L., Wang, H.L., Sun, Y.P., Yang, Y.G., 2017. 5-methylcytosine promotes mRNA export - NSUN2 as the methyltransferase and ALYREF as an m(5)C reader. Cell Res. 27, 606-625.
-
Yang, Y., Wang, L., Han, X., Yang, W.L., Zhang, M., Ma, H.L., Sun, B.F., Li, A., Xia, J., Chen, J., Heng, J., Wu, B., Chen, Y.S., Xu, J.W., Yang, X., Yao, H., Sun, J., Lyu, C., Wang, H.L., Huang, Y., Sun, Y.P., Zhao, Y.L., Meng, A., Ma, J., Liu, F., Yang, Y.G., 2019. RNA 5-methylcytosine facilitates the maternal-to-zygotic transition by preventing maternal mRNA decay. Mol Cell. 75, 1188-1202.e1111.
-
Zhang, X., Hao, H., Ma, L., Zhang, Y., Hu, X., Chen, Z., Liu, D., Yuan, J., Hu, Z., Guan, W., 2021. Methyltransferase-like 3 modulates severe acute respiratory syndrome coronavirus-2 RNA N6-methyladenosine modification and replication. mBio. 12, e0106721.
-
Zhao, Y., Shi, Y., Shen, H., Xie, W., 2020. m(6)A-binding proteins: the emerging crucial performers in epigenetics. J. Hematol. Oncol. 13, 35.