SUN Yong-Tao, BAI Xue-Fan, YANG Wei-Song, HUANG Chang-Xing and ZHOU Yong-Xin. Genomic Typing and Sequence Analysis of Hantavirus[J]. Virologica Sinica, 1996, 11(4).
Citation: SUN Yong-Tao, BAI Xue-Fan, YANG Wei-Song, HUANG Chang-Xing, ZHOU Yong-Xin. Genomic Typing and Sequence Analysis of Hantavirus .VIROLOGICA SINICA, 1996, 11(4) : 319.

汉坦病毒的基因分型及其序列分析

  • 为了探讨从核苷酸水平耐汉坦病毒进行分型,设计两对型特异性引物,采用反转录和聚合酶链式反应(RT-PCR),对亚太地区18株汉坦病毒进行了扩增鉴定,并对其中7株汉坦病毒的PCR产物进行了测序分析。PCR的分型结果表明,Ⅰ型引物只能扩增血清Ⅰ型病毒的cDNA;Ⅱ型引物也只能扩增血清Ⅱ型病毒,其间无交叉反应。采用巢式PCR和限制性内切酶验证了PCR产物的特异性。序列分析结果表明,R36M片段G1区的核苷酸序列与血清Ⅰ型病毒代表株76-118的同源性为78.4%,而与血清Ⅱ型病毒R22的同源性为68.1%;R36与汉坦病毒序列同源性的成对比较结果也表明,R36与血清Ⅰ型病毒的同源性均高于血清Ⅱ型病毒;Leakey虽然能被Ⅱ型引物扩增,但其序列与血清Ⅱ型病毒R22的同源性仅为44.9%,故不属于血清Ⅱ型病毒。上述研究结果表明,反转录聚合酶链反应能对多数汉坦病毒准确分型,但最终结果尚有赖于序列分析。

Genomic Typing and Sequence Analysis of Hantavirus

  • The present study reports the use of reverse transcriptase polymerase chain reaction(RT-PCR)for typing 18 independently isolated Hantaviruses from Asia-Pacific area by 2 sets of type-specific primers and the sequence analysis.The results of PCR showed that Hantaan specificprimers could amplify all 10 isolates in the Hantaan serotype,while Seoul specific primers werereactive to all 7 isolates in Seoul serotype and Leakey.No cross-reaction was obserred in the ex-periment.The PCR products were analysed by nested PCR and restriction endonuclease digestionfor further confirmation。The sequence analysis of PCR products revealed that the sequence simi-larities of R36 between 76-118 and R22 were 78.4% and 68.1%,respectively. In addition,apairwise comparison of sequence homology revealed that R36 shares a higher degree of sequencehomology with isolates in Hantaan serotype than those in Seoul serotype.Lekey could be ampli-fied by Seoul specific primers

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    Genomic Typing and Sequence Analysis of Hantavirus

    • 1. Department ofInfectious D~eases.Tangdu Hospita1.The Fourth MilitaryMedical University.Xi'an 710038

    Abstract: The present study reports the use of reverse transcriptase polymerase chain reaction(RT-PCR)for typing 18 independently isolated Hantaviruses from Asia-Pacific area by 2 sets of type-specific primers and the sequence analysis.The results of PCR showed that Hantaan specificprimers could amplify all 10 isolates in the Hantaan serotype,while Seoul specific primers werereactive to all 7 isolates in Seoul serotype and Leakey.No cross-reaction was obserred in the ex-periment.The PCR products were analysed by nested PCR and restriction endonuclease digestionfor further confirmation。The sequence analysis of PCR products revealed that the sequence simi-larities of R36 between 76-118 and R22 were 78.4% and 68.1%,respectively. In addition,apairwise comparison of sequence homology revealed that R36 shares a higher degree of sequencehomology with isolates in Hantaan serotype than those in Seoul serotype.Lekey could be ampli-fied by Seoul specific primers

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