MA Hui-Hui, YANG Chao-Ji, LI Gang, CHEN Xue-Juan, LIAO Jia-Jie and TAO Ji-Lu. M olecular Cloning and Sequencing the NS5 Genomic Region of HGV Guangdong and Hong Kong Strains[J]. Virologica Sinica, 1999, 14(1): 36-41.
Citation: MA Hui-Hui, YANG Chao-Ji, LI Gang, CHEN Xue-Juan, LIAO Jia-Jie, TAO Ji-Lu. M olecular Cloning and Sequencing the NS5 Genomic Region of HGV Guangdong and Hong Kong Strains .VIROLOGICA SINICA, 1999, 14(1) : 36-41.

HGV广东株和香港株NS5区部分基因的克隆及序列分析

  • 采用HGVNS5特异的2对引物,对两个香港株和一个广东株HGVRNA进行逆转录套式PCR扩增,PCR产物克隆入pUC19,重组质粒转化DH5和JM109菌株。PCR和酶切法鉴定阳性克隆,双脱氧链末端终止法测定核苷酸序列并进行同源性分析。结果发现核苷酸变异呈散在分布,三株间核苷酸和氨基酸序列同源性分别为93.3%~94%及97%~99.2%,与已报道的中国株(CN)相比,则同源性分别为90%~91.2%和94%~96.3%,与美国株(PNF2161及R10291)相比,为87.1%~89.5%和95.2%~97%,而与西非株(GBVC)相比,则达91.4%~93.8%和97%~97.9%。提示HGVNS5区核苷酸和氨基酸序列相对保守,不同HGV株存在一定的地区差异。

M olecular Cloning and Sequencing the NS5 Genomic Region of HGV Guangdong and Hong Kong Strains

  • HGV NS5 cDNA of two Hong Kong strains and one Guangdong strain were amplified by re verse transcription polymerase chain reaction (RT-PCR).T}le products were inserted into pUC19 vect0rs respectively.~fter transfecting DH5a and JM 109 strains.the reeombinants were screened and identified by PCR and dig ted wlth restriction erldDnudeses.n 1e nudeotldes were sequenced by the Ndmxy chain termination method n 1e homologies d HGV NS5 r~ ion nucleotide and d~umdlTlillO acid sequences were 93 3% 一94% and 97% 一99.2% re印ecnve【v between eachHangKong strainandtheGtm~dong strain an dwere 90% 一91 2% and 94% 一96 3% ,87.1% 一89.5% an d 95.2% 一97% 91 4% 93 8% and 97% 97 9% respectively Compared with the reported China isolate(CN) American iso lates(PNF2161 and R10291),and West African lsolated(GBV-C) T}1e variant sites of the nudeotides appear spor~ ieally T}le nucleotide an d ded umd amino acid seQuences of HGV NS5 genornic region are relatively conserved ,andit also sog gests thatthe nudeotide variation ofHGV may beinfluenced by geo graphical factors

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    M olecular Cloning and Sequencing the NS5 Genomic Region of HGV Guangdong and Hong Kong Strains

    • 1. Department ofinfectiousDiseases,Sun Yat&mdash

    Abstract: HGV NS5 cDNA of two Hong Kong strains and one Guangdong strain were amplified by re verse transcription polymerase chain reaction (RT-PCR).T}le products were inserted into pUC19 vect0rs respectively.~fter transfecting DH5a and JM 109 strains.the reeombinants were screened and identified by PCR and dig ted wlth restriction erldDnudeses.n 1e nudeotldes were sequenced by the Ndmxy chain termination method n 1e homologies d HGV NS5 r~ ion nucleotide and d~umdlTlillO acid sequences were 93 3% 一94% and 97% 一99.2% re印ecnve【v between eachHangKong strainandtheGtm~dong strain an dwere 90% 一91 2% and 94% 一96 3% ,87.1% 一89.5% an d 95.2% 一97% 91 4% 93 8% and 97% 97 9% respectively Compared with the reported China isolate(CN) American iso lates(PNF2161 and R10291),and West African lsolated(GBV-C) T}1e variant sites of the nudeotides appear spor~ ieally T}le nucleotide an d ded umd amino acid seQuences of HGV NS5 genornic region are relatively conserved ,andit also sog gests thatthe nudeotide variation ofHGV may beinfluenced by geo graphical factors

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