-
Bao JY, Wang QH, Lin P, Liu CJ, Li L, Wu XD, Chi TY, Xu TG, Ge SQ, Liu YT, Li JM, Wang SJ, Qu HL, Jin T, Wang ZL, 2019: Genome comparison of African swine fever virus China/2018/AnhuiXCGQ strain and related European p72 Genotype Ⅱ strains[J]. Transbound Emerg Dis, 66, 1167-1176. doi: 10.1111/tbed.13124
-
Bastos ADS, Penrith ML, Cruciere C, Edrich JL, Hutchings G, Roger F, Couacy-Hymann E, Thomson GR, 2003: Genotyping field strains of African swine fever virus by partial p72 gene characterisation[J]. Arch Virol, 148, 693-706. doi: 10.1007/s00705-002-0946-8
-
Chapman DAG, Tcherepanov V, Upton C, Dixon LK, 2008: Comparison of the genome sequences of nonpathogenic and pathogenic African swine fever virus isolates[J]. J Gen Virol, 89, 397-408. doi: 10.1099/vir.0.83343-0
-
Costard S, Wieland B, de Glanville W, Jori F, Rowlands R, Vosloo W, Roger F, Pfeiffer DU, Dixon LK, 2009: African swine fever: how can global spread be prevented?[J]. Philos Trans R Soc B Biol Sci, 364, 2683-2696. doi: 10.1098/rstb.2009.0098
-
Dixon LK, Chapman DAG, Netherton CL, Upton C, 2013: African swine fever virus replication and genomics[J]. Virus Res, 173, 3-14. doi: 10.1016/j.virusres.2012.10.020
-
Dixon LK, Sun H, Roberts H, 2019: African swine fever[J]. Antiviral Res, 165, 34-41. doi: 10.1016/j.antiviral.2019.02.018
-
Edgar RC, 2004: MUSCLE: a multiple sequence alignment method with reduced time and space complexity[J]. BMC Bioinform, 5, 1-19. doi: 10.1186/1471-2105-5-1
-
Iyer LA, Balaji S, Koonin EV, Aravind L, 2006: Evolutionary genomics of nucleo-cytoplasmic large DNA viruses[J]. Virus Res, 117, 156-184. doi: 10.1016/j.virusres.2006.01.009
-
Jori F, Vial L, Penrith ML, Perez-Sanchez R, Etter E, Albina E, Michaud V, Roger F, 2013: Review of the sylvatic cycle of African swine fever in sub-Saharan Africa and the Indian ocean[J]. Virus Res, 173, 212-227. doi: 10.1016/j.virusres.2012.10.005
-
Medini D, Donati C, Tettelin H, Masignani V, Rappuoli R, 2005: The microbial pan-genome[J]. Curr Opin Genet Dev, 15, 589-594. doi: 10.1016/j.gde.2005.09.006
-
Sanchez-Vizcaino JM, Mur L, Gomez-Villamandos JC, Carrasco L, 2015: An update on the epidemiology and pathology of African swine fever[J]. J Comp Pathol, 152, 9-21. doi: 10.1016/j.jcpa.2014.09.003
-
Stamatakis A, 2014: RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies[J]. Bioinformatics, 30, 1312-1313. doi: 10.1093/bioinformatics/btu033
-
Tcherepanov V, Ehlers A, Upton C, 2006: Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome[J]. BMC Genom, 7, 150-. doi: 10.1186/1471-2164-7-150
-
Vernikos G, Medini D, Riley DR, Tettelin H, 2015: Ten years of pan-genome analyses[J]. Curr Opin Microbiol, 23, 148-154. doi: 10.1016/j.mib.2014.11.016
-
Wang N, Zhao DM, Wang JL, Zhang YL, Wang M, Gao Y, Li F, Wang JF, Bu ZG, Rao ZH, Wang XX, 2019: Architecture of African swine fever virus and implications for viral assembly[J]. Science, 366, 640-644. doi: 10.1126/science.aaz1439
-
Wen XX, He XJ, Zhang X, Zhang XF, Liu LL, Guan YT, Zhang Y, Bu ZG, 2019: Genome sequences derived from pig and dried blood pig feed samples provide important insights into the transmission of African swine fever virus in China in 2018[J]. Emerg Microbes Infect, 8, 303-306. doi: 10.1080/22221751.2019.1565915
-
Zhao YB, Wu JY, Yang JH, Sun SX, Xiao JF, Yu J, 2012: PGAP: pan-genomes analysis pipeline[J]. Bioinformatics, 28, 416-418. doi: 10.1093/bioinformatics/btr655
-
Zhao YB, Jia XM, Yang JH, Ling YC, Zhang Z, Yu J, Wu JY, Xiao JF, 2014: PanGP: a tool for quickly analyzing bacterial pan-genome profile[J]. Bioinformatics, 30, 1297-1299. doi: 10.1093/bioinformatics/btu017
-
Zhu ZZ, Xiao CT, Fan YS, Cai ZN, Lu CY, Zhang GH, Jiang TJ, Tan YJ, Peng YS, 2019: Homologous recombination shapes the genetic diversity of African swine fever viruses[J]. Vet Microbiol, 236, 108380-. doi: 10.1016/j.vetmic.2019.08.003