Figure 2个  Table 2个
    • Sample no.Isolate nameYearGenotypeAccession number
      E geneNS1 gene
      11/D3/Del/20132013ⅢKT250573KT250581
      22/D3/Del/20132013ⅢKT250574KT250582
      33/D3/Del/20132013ⅢKT250575KT250583
      44/D3/Del/20132013ⅢKT250576KT250584
      55/D3/Del/20132013ⅢKT250577KT250585
      66/D3/Del/20132013ⅢKT250578KT250586
      77/D3/Del/20132013ⅢKT250579KT250587
      88/D3/Del/20132013ⅢKT250580KT250588
      91/D3/Del/20142014ⅢKT250589KT250593
      102/D3/Del/20142014ⅢKT250590KT250594
      113/D3/Del/20142014ⅢKT250591KT250595
      124/D3/Del/20142014ⅢKT250592KT250596

      Table 1.  Details of DENV-3 isolates from India sequenced in the study.

    • Sample
      no.      		Isolate nameCountry & RegionYearGenotypeAccession
      no.
      1.Sleman/78Indonesia1978ⅠAY648961
      2.InJ-16-82Indonesia1982ⅠDQ401690
      3.den3_88Indonesia1988ⅠAY858038
      4.PF89/27643French Polynesia1989ⅠAY744677
      5.PF90/3056French Polynesia1990ⅠAY744680
      6.PF94/136116French Polynesia1994ⅠAY744685
      7.PhMH-J1-97Philippines1997ⅠAY496879
      8.98902890 DF DV-3Indonesia1998ⅠAB189128
      9.KJ30iIndonesia2004ⅠAY858042
      10.D3/Hu/TL129NIID/2005East Timor2005ⅠAB214882
      11.DENV-3/TH/BID-V3360/1973Thailand1973ⅡGQ868593
      12.ThD3_0010_87Thailand1987ⅡAY676352
      13.C0360/94Thailand1994ⅡAY923865
      14.Singapore 8120/95Singapore1995ⅡAY766104
      15.98TW358China's Taiwan1998ⅡDQ675522
      16.DENV-3/TH/BID-V2329/2001Thailand2001ⅡFJ744740
      17.DENV-3/IPC/BID-V3809/2003Cambodia2003ⅡGU131906
      18.DENV-3/KH/BID-V2087/2005Cambodia2005ⅡGQ868629
      19.DENV-3/VN/BID-V1014/2006Vietnam2006ⅡEU482458
      20.DENV-3/KH/BID-V3829/2007Cambodia2007ⅡHM181935
      21.DENV-3/IPC/BID-V3808/2008Cambodia2008ⅡGU131905
      22.DENV-3/LK/BID-V2410/1983Sri Lanka1983ⅢGQ199889
      23.DENV-3/MZ/BID-V2418/1985Mozambique1985ⅢFJ882575
      24.DENV-3/LK/BID-V2414/1985Sri Lanka1985ⅢFJ882574
      25.DENV-3/LK/BID-V2412/1989Sri Lanka1989ⅢFJ882572
      26.DENV-3/LK/BID-V2411/1989Sri Lanka1989ⅢFJ882571
      27.DENV-3/LK/BID-V2413/1993Sri Lanka1993ⅢFJ882573
      28.BR DEN3 97-04Brazil1997ⅢEF629367
      29.DENV-3/LK/BID-V2409/1997Sri Lanka1997ⅢGQ252674
      30.DENV-3/US/BID-V1449/1998Puerto Rico1998ⅢEU726772
      31.99TW628China's Taiwan1999ⅢDQ675533
      32.DENV-3/US/BID-V1452/1999Puerto Rico1999ⅢEU781137
      33.D3/H/IMTSSA-MART/1999/1243Martinique1999ⅢAY099337
      34.DENV-3/VE/BID-V2175/2000Venezuela2000ⅢFJ639747
      35.DENV-3/US/BID-V2103/2000Puerto Rico2000ⅢFJ547071
      36.D3/H/IMTSSA-SRI/2000/1266Sri Lanka2000ⅢAY099336
      37.DENV-3/LC/BID-V3929/2001Saint Lucia2001ⅢGQ868616
      38.DENV-3/VE/BID-V911/2001Venezuela2001ⅢEU529691
      39.DENV-3/VE/BID-V913/2001Venezuela2001ⅢEU482614
      40.DENV-3/CO/BID-V3393/2002Colombia2002ⅢGQ868571
      41.BR74886/02Brazil2002ⅢAY679147
      42.DENV-3/CO/BID-V3398/2003Colombia2003ⅢGQ868574
      43.D3BR/RP1/2003Brazil2003ⅢEF643017
      44.DENV-3/US/BID-V1089/2003Puerto Rico2003ⅢEU529702
      45.GWL-25India2003ⅢAY770511
      46.DENV-3/VE/BID-V1590/2004Venezuela2004ⅢFJ373304
      47.DENV-3/US/BID-V1606/2004Puerto Rico2004ⅢFJ024465
      48.DENV-3/CO/BID-V3400/2004Colombia2004ⅢGQ868575
      49.D3/SG/SS710/2004Singapore2004ⅢEU081181
      50.D3/SG/05K2933DK1/2005Singapore2005ⅢEU081198
      51.DENV-3/US/BID-V1621/2005Puerto Rico2005ⅢFJ182011
      52.DENV-3/VE/BID-V1593/2005Venezuela2005ⅢEU854292
      53.NAaSingapore2005ⅢAY662691
      54.D3/SG/05K2918DK1/2005Singapore2005ⅢEU081197
      55.D3/SG/05K3316DK1/2005Singapore2005ⅢEU081202
      56.DENV-3/IND/59826/2005India2005ⅢJQ922557
      57.DENV-3/IND/58760/2005India2005ⅢJQ922556
      58.NIV_058760India2005ⅢJQ686078
      59.NIV_059826India2005ⅢJQ686077
      60.DENV-3/CO/BID-V3404/2006Colombia2006ⅢGU131954
      61.DENV-3/US/BID-V1080/2006Puerto Rico2006ⅢEU529699
      62.D3/Pakistan/43298/2006Pakistan2006ⅢKF041259
      63.D3/Pakistan/55709/2006Pakistan2006ⅢKF041256
      64.DENV-3/CO/BID-V3405/2007Colombia2007ⅢGQ868578
      65.DENV-3/BR/BID-V3615/2007Brazil2007ⅢGU131878
      66.DENV-3/VE/BID-V2483/2007Venezuela2007ⅢGQ868587
      67.ND-143India2007ⅢFJ644564
      68.RR-72India2008ⅢGQ466079
      69.DENV-3/NI/BID-V4743/2009Nicaragua2009ⅢHQ166034
      70.GZ1D3China2009ⅢGU363549
      71.D3/Pakistan/45251/2009Pakistan2009ⅢKF041258
      72.NIV_0948359India2009ⅢJQ686081
      73.NIV_1029582India2010ⅢJQ686080
      74.NIV_1030355India2010ⅢJQ686076
      75.D3/India/1008aTwIndia2010ⅢJF968097
      76.13GDZDVS30BChina2013ⅢKF954946
      77.13GDZDVS30CChina2013ⅢKF954947
      78.13GDZDVS30DChina2013ⅢKF954948
      79.13GDZDVS30EChina2013ⅢKF954949
      80.13GDZDVS30AChina2013ⅢKF954945
      81.Puerto Rico 1963Puerto Rico1963ⅣL11433
      82.Puerto Rico 1977Puerto Rico1977ⅣL11434
      83.H87Philippines1956ⅤM93130
      84.80-2China1980ⅤAF317645
      85.BR DEN3 RO1-02Brazil2002ⅤEF629370
      aNA, name of the isolate is not available in GenBank

      Table S1.  DENV-3 isolates of diverse geographic origin, used in the study.