-
Blythe M J, Flower D R. Benchmarking B cell epitope prediction: Underperformance of existing methods[J]. Protein Sci, 2005, 14(1): 246-248.
-
Bui HH, Peters B, Assarsson E. Ab and T cell epitopes of influenza A virus, knowledge and opportunities[J]. Proc Natl Acad Sci USA, 2007, 104(1): 246-251. doi: 10.1073/pnas.0609330104
-
Buus S, Lauem ller S L, Worning P. Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach[J]. Tissue Antigens, 2003, 62(5): 378-384. doi: 10.1034/j.1399-0039.2003.00112.x
-
Davies M N, Flower D R. Harnessing bioinfor-matics to discover new vaccines[J]. Drug Discov Today, 2007, 12(9-10): 389-395. doi: 10.1016/j.drudis.2007.03.010
-
Díaz I, Pujols J, Ganges L. In silico prediction and ex vivo evaluation of potential T-cell epitopes in glycoproteins 4 and 5 and nucleocapsid protein of genotype-Ⅰ (European) of porcine reproductive and respiratory syndrome virus[J]. Vaccine, 2009, 27(41): 5603-5611. doi: 10.1016/j.vaccine.2009.07.029
-
Donnes P, Elofsson A. Prediction of MHC class Ⅰ binding peptides, using SVMHC[J]. BMC Bioinformatics, 2002, 3(): 25-. doi: 10.1186/1471-2105-3-25
-
Donnes P, Kohlbacher O. SVMHC: a server for prediction of MHC-binding peptides[J]. Nucl Acids Res, 2006, 34(): W194-W197. doi: 10.1093/nar/gkl284
-
Guan P, Doytchinova I A, Zygouri C. MHCPred: bringing a quantitative dimension to the online prediction of MHC binding[J]. Appl Bioinformatics, 2003, 2(1): 63-66.
-
Haste Andersen P, Nielsen M, Lund O. Prediction of residues in discontinuous B-cell epitopes using protein 3D structures[J]. Protein Sci, 2006, 15(11): 2558-2567. doi: 10.1110/(ISSN)1469-896X
-
Herd K A, Mahalingam S, Mackay I M. Cytotoxic T-lymphocyte epitope vaccination protects against human metapneumovirus infection and disease in mice[J]. J Virol, 2006, 80(4): 2034-2044. doi: 10.1128/JVI.80.4.2034-2044.2006
-
Jameson B A, Wolf H. The antigenic index: a novel algorithm for predicting antigenic determinants[J]. Bioinformatics, 1988, 4(1): 181-186. doi: 10.1093/bioinformatics/4.1.181
-
Jin X, Newman M J, De-Rosa S. A novel HIV T helper epitope-based vaccine elicits cytokine-secreting HIV-specific CD4+ T cells in a Phase Ⅰ clinical trial in HIV-uninfected adults[J]. Vaccine, 2009, 27(50): 7080-7086. doi: 10.1016/j.vaccine.2009.09.060
-
Kulkarni-Kale U, Bhosles S, Kolaskar A S. CEP: a conformational epitope prediction server[J]. Nucl Acids Res, 2005, 33(): W168-W171. doi: 10.1093/nar/gki460
-
Larsen J E, Lund O, Nielsen M. Improved method for predicting linear B-cell epitopes[J]. Immunome Res, 2006, 2(): 2-. doi: 10.1186/1745-7580-2-2
-
Lv Y, Ruan Z, Wang L. Identification of a novel conserved HLA-A*0201-restricted epitope from the spike protein of SARS-CoV[J]. BMC Immunol, 2009, 10(): 61-. doi: 10.1186/1471-2172-10-61
-
Noguchi H, Kato R, Hanai T. Hidden Markov model-based prediction of antigenic peptides that interact with MHC class Ⅱ molecules[J]. J Biosci Bioeng, 2002, 94(3): 264-270. doi: 10.1016/S1389-1723(02)80160-8
-
Rammensee H, Bachmann J, Emmerich N P. SYFPEITHI: database for MHC ligands and peptide motifs[J]. Immunogenetics, 1999, 50(3-4): 213-219. doi: 10.1007/s002510050595
-
Saha S, Raghava G P. Prediction of Continuous B-cell Epitopes in an Antigen Using Recurrent Neural Network[J]. Proteins, 2006, 65(1): 40-48. doi: 10.1002/prot.21078
-
Simon G G, Hu Y, Khan A M. Dendritic cell mediated delivery of plasmid DNA encoding LAMP/ HIV-1 Gag fusion immunogen enhances T cell epitope responses in HLA DR4 transgenic mice[J]. PLoS One, 2010, 5(1): e8574-. doi: 10.1371/journal.pone.0008574
-
Singh H, Raghava G P. ProPred: Prediction of HLA-DR binding sites[J]. Bioinformatics, 2001, 17(12): 1236-1237. doi: 10.1093/bioinformatics/17.12.1236
-
Wang B, Yao K, Liu G. Computational Prediction and Identification of Epstein-Barr Virus Latent Membrane Protein 2A Antigen-Specific CD8+ T-Cell[J]. Cell Mol Immunol, 2009, 6(2): 97-103. doi: 10.1038/cmi.2009.13
-
Zhang Z W, Zhang Y G, Wang Y L. Screening and identification of B cell epitopes of structural proteins of foot-and-mouth disease virus serotype Asia1[J]. Vet Microbiol, 2010, 140(1-2): 25-33. doi: 10.1016/j.vetmic.2009.07.011