-
-
Sample Location Latitude and longtitude Soil type Total C
(g/kg)Total N
(g/kg)Total P
(g/kg)pH Number of psbA clones 5
August20
August4
SeptemberDA DaAn, Jilin 45°36'N,
123°50'ESaline-alka
line soil10.49 0.43 0.37 7.68 70 35 12 MDJ MuDanJiang,
longjiang44°26'N,
129°29'EDarkwn
soil14.99 1.07 0.76 6.27 8 12 23 Table 1. Sampling locations of paddy fields, soil properties and numbers of psbA clones obtained in this study
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Clone name
(PW-)Lengtha Alignment Closest relative Source Accession numberb Identity
(%)DA-Ⅰ-1 264 263/264 NoF9 Paddy floodwater in Japan BAH23189 99 DA-Ⅰ-2 264 258/264 CM6 Paddy floodwater in Japan BAH23213 98 DA-Ⅰ-3 264 261/264 NoF10 Paddy floodwater in Japan BAH23190 99 DA-Ⅰ-4 264 255/264 NoF10 Paddy floodwater in Japan BAH23190 97 DA-Ⅰ-5 264 257/264 CF (-N) 9 Paddy floodwater in Japan BAH23199 97 DA-Ⅰ-6 264 259/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅰ-7 264 254/264 NoF10 Paddy floodwater in Japan BAH23190 96 DA-Ⅰ-8 264 260/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅰ-9 264 256/264 LK20mp-22 Freshwater lake Kinneret (Israel) AAZ93918 97 DA-Ⅰ-10 264 263/264 NoF9 Paddy floodwater in Japan BAH23189 99 DA-Ⅰ-11 264 258/264 PN09-068 Clone in East China Sea AGL79161 98 DA-Ⅰ-12 264 259/264 NoF9 Paddy floodwater in Japan BAH23189 98 DA-Ⅰ-14 264 262/264 NoF9 Paddy floodwater in Japan BAH23189 99 DA-Ⅰ-15 264 259/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅰ-16 264 258/264 CF (-N) 9 Paddy floodwater in Japan BAH23199 98 DA-Ⅰ-17 264 261/264 NoF10 Paddy floodwater in Japan BAH23190 99 DA-Ⅰ-19 264 261/264 NoF10 Paddy floodwater in Japan BAH23190 99 DA-Ⅰ-20 264 258/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅰ-21 264 260/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅰ-22 264 255/264 NoF10 Paddy floodwater in Japan BAH23190 97 DA-Ⅰ-23 264 260/264 NoF9 Paddy floodwater in Japan BAH23189 98 DA-Ⅰ-24 264 248/264 CF (-N) 7 Paddy floodwater in Japan BAH23197 94 DA-Ⅰ-25 264 258/264 CF (-N) 9 Paddy floodwater in Japan BAH23199 98 DA-Ⅰ-26 264 254/264 CM10 Paddy floodwater in Japan BAH23217 96 DA-Ⅰ-27 264 260/264 NoF9 Paddy floodwater in Japan BAH23189 98 DA-Ⅰ-28 264 261/264 NoF10 Paddy floodwater in Japan BAH23190 99 DA-Ⅰ-29 264 262/264 NoF9 Paddy floodwater in Japan BAH23189 99 DA-Ⅰ-30 264 260/264 NoF9 Paddy floodwater in Japan BAH23189 98 DA-Ⅰ-31 264 259/264 PN09-068 Clone in East China Sea AGL79161 98 DA-Ⅰ-32 264 258/264 PN04-091 Clone in East China Sea AGL79481 98 DA-Ⅰ-33 264 260/264 NoF7 Paddy floodwater in Japan BAH23187 98 DA-Ⅰ-34 264 252/264 NoF10 Paddy floodwater in Japan BAH23190 95 DA-Ⅰ-35 264 256/264 LK20mP-22 Freshwater lake Kinneret (Israel) AAZ93918 97 DA-Ⅰ-37 264 258/264 PN09-068 Clone in East China Sea AGL79161 98 DA-Ⅰ-38 264 261/263 Cyanophage
S-RIM17Coastal marine cyanophage ACY42497 99 DA-Ⅰ-39 264 259/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅰ-40 264 256/264 DH22-026 Clone in East China Sea AGL78823 97 DA-Ⅰ-41 264 262/264 Cyanophage
S-RIM17Coastal marine cyanophage ACY42497 99 DA-Ⅰ-42 264 254/264 NoF10 Paddy floodwater in Japan BAH23190 96 DA-Ⅰ-43 264 255/264 NoF10 Paddy floodwater in Japan BAH23190 97 DA-Ⅰ-44 264 253/264 NoF10 Paddy floodwater in Japan BAH23190 96 DA-Ⅰ-45 264 252/264 CM10 Paddy floodwater in Japan BAH23217 95 DA-Ⅰ-46 264 257/264 CF (-N) 9 Paddy floodwater in Japan BAH23199 97 DA-Ⅰ-47 264 258/263 Cyanophage
S-RIM17Coastal marine cyanophage ACY42497 98 DA-Ⅰ-48 264 255/264 NoF10 Paddy floodwater in Japan BAH23190 97 DA-Ⅰ-49 264 257/264 PN09-068 Clone in East China Sea AGL79161 97 DA-Ⅰ-50 264 248/264 CF (-N) 7 Paddy floodwater in Japan BAH23197 94 DA-Ⅰ-51 264 259/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅰ-52 264 255/264 CF (-N) 7 Paddy floodwater in Japan BAH23197 97 DA-Ⅰ-53 264 254/264 NoF10 Paddy floodwater in Japan BAH23190 96 DA-Ⅰ-54 264 258/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅰ-55 264 261/264 NoF10 Paddy floodwater in Japan BAH23190 99 DA-Ⅰ-56 264 259/264 PN04-056 Clone in East China Sea AGL79446 98 DA-Ⅰ-57 264 259/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅰ-58 264 257/264 NoF10 Paddy floodwater in Japan BAH23190 97 DA-Ⅰ-59 264 258/264 PN09-068 Clone in East China Sea AGL79161 98 DA-Ⅰ-60 264 260/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅰ-61 264 256/264 LK20mp-22 Freshwater lake Kinneret (Israel) AAZ93918 97 DA-Ⅰ-62 264 252/264 CM10 Paddy floodwater in Japan BAH23217 95 DA-Ⅰ-63 264 254/264 CF (-N) 8 Paddy floodwater in Japan BAH23198 96 DA-Ⅰ-64 264 249/264 CF (-N) 7 Paddy floodwater in Japan BAH23197 94 DA-Ⅰ-65 264 254/264 NoF10 Paddy floodwater in Japan BAH23190 96 DA-Ⅰ-66 264 258/264 CF (-N) 9 Paddy floodwater in Japan BAH23199 98 DA-Ⅰ-67 264 257/264 NoF10 Paddy floodwater in Japan BAH23190 97 DA-Ⅰ-68 264 258/264 PN09-068 Clone in East China Sea AGL79161 98 DA-Ⅰ-69 264 257/264 PN09-068 Clone in East China Sea AGL79161 97 DA-Ⅰ-70 264 259/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅰ-71 264 260/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅰ-72 264 251/264 NoF10 Paddy floodwater in Japan BAH23190 95 DA-Ⅰ-73 264 251/264 CM9 Paddy floodwater in Japan BAH23216 95 DA-Ⅱ-2 264 258/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅱ-3 264 258/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅱ-4 264 259/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅱ-5 264 259/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅱ-6 264 261/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 99 DA-Ⅱ-7 264 260/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 98 DA-Ⅱ-8 264 259/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅱ-9 264 261/264 CM7 Paddy floodwater in Japan BAH23214 99 DA-Ⅱ-10 264 261/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 99 DA-Ⅱ-11 264 261/264 NoF10 Paddy floodwater in Japan BAH23190 99 DA-Ⅱ-12 264 260/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅱ-13 264 259/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅱ-14 264 258/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 98 DA-Ⅱ-15 262 261/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 99 DA-Ⅱ-16 264 257/264 NoF10 Paddy floodwater in Japan BAH23190 97 DA-Ⅱ-17 264 261/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 99 DA-Ⅱ-18 264 261/264 NoF10 Paddy floodwater in Japan BAH23190 99 DA-Ⅱ-19 262 259/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 98 DA-Ⅱ-20 264 260/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 98 DA-Ⅱ-21 264 258/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅱ-22 264 260/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅱ-23 264 259/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 98 DA-Ⅱ-24 264 258/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 98 DA-Ⅱ-25 264 261/264 NoF10 Paddy floodwater in Japan BAH23190 99 DA-Ⅱ-26 264 260/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 98 DA-Ⅱ-27 264 256/264 NoF10 Paddy floodwater in Japan BAH23190 97 DA-Ⅱ-28 264 259/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅱ-29 264 257/264 CM10 Paddy floodwater in Japan BAH23217 97 DA-Ⅱ-30 264 260/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 98 DA-Ⅱ-31 264 260/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅱ-32 264 259/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅱ-33 264 259/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 98 DA-Ⅱ-34 264 260/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 98 DA-Ⅱ-35 264 259/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅱ-36 264 258/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅲ-1 264 261/264 NoF10 Paddy floodwater in Japan BAH23190 99 DA-Ⅲ-2 264 259/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅲ-3 264 260/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅲ-4 264 259/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅲ-5 264 259/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅲ-6 264 258/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 98 DA-Ⅲ-7 264 255/264 NoF10 Paddy floodwater in Japan BAH23190 97 DA-Ⅲ-8 264 259/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅲ-9 264 255/264 NoF10 Paddy floodwater in Japan BAH23190 97 DA-Ⅲ-10 264 254/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 96 DA-Ⅲ-11 264 260/264 NoF10 Paddy floodwater in Japan BAH23190 98 DA-Ⅲ-12 264 257/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 97 MDJ-Ⅰ-1 264 256/264 Synechococcus
phage S-CBP3Isolation in Chesapeake Bay AFK66481 97 MDJ-Ⅰ-2 264 261/264 NoF10 Paddy floodwater in Japan BAH23190 99 MDJ-Ⅰ-3 264 257/264 NoF10 Paddy floodwater in Japan BAH23190 97 MDJ-Ⅰ-4 264 257/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 97 MDJ-Ⅰ-5 264 260/264 LK20mP-12 Freshwater lake Kinneret (Israel) AAZ93917 98 MDJ-Ⅰ-6 264 255/264 uncultured
Synechococcus sp.Transect cruise at eastern AAU84542 97 MDJ-Ⅰ-7 264 262/264 Nostoc sp. PCC7107 Unknown WP_015112088 99 MDJ-Ⅰ-8 264 260/264 NoF10 Paddy floodwater in Japan BAH23190 98 MDJ-Ⅱ-1 264 258/264 PN09-068 Clone in East China Sea AGL76161 98 MDJ-Ⅱ-2 264 260/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 98 MDJ-Ⅱ-3 264 261/264 NoF10 Paddy floodwater in Japan BAH23190 99 MDJ-Ⅱ-4 264 259/264 CF (-N) 9 Paddy floodwater in Japan BAH23199 98 MDJ-Ⅱ-5 264 261/264 NoF10 Paddy floodwater in Japan BAH23190 99 MDJ-Ⅱ-6 264 258/264 NoF10 Paddy floodwater in Japan BAH23190 98 MDJ-Ⅱ-7 264 258/264 NoF10 Paddy floodwater in Japan BAH23190 98 MDJ-Ⅱ-8 264 258/264 NoF10 Paddy floodwater in Japan BAH23190 98 MDJ-Ⅱ-9 264 262/264 NoF10 Paddy floodwater in Japan BAH23190 99 MDJ-Ⅱ-10 264 260/264 NoF10 Paddy floodwater in Japan BAH23190 98 MDJ-Ⅱ-11 264 260/264 NoF10 Paddy floodwater in Japan BAH23190 98 MDJ-Ⅱ-12 264 254/264 Synechococcus
phage S-CBP3Isolation in Chesapeake Bay AFK66481 96 MDJ-Ⅲ-1 263 257/264 NoF10 Paddy floodwater in Japan BAH23190 97 MDJ-Ⅲ-2 264 261/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 99 MDJ-Ⅲ-3 264 260/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 98 MDJ-Ⅲ-4 264 256/264 NoF10 Paddy floodwater in Japan BAH23190 97 MDJ-Ⅲ-5 264 258/264 NoF10 Paddy floodwater in Japan BAH23190 98 MDJ-Ⅲ-6 264 257/264 NoF10 Paddy floodwater in Japan BAH23190 97 MDJ-Ⅲ-7 264 260/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 98 MDJ-Ⅲ-8 264 257/264 NoF10 Paddy floodwater in Japan BAH23190 97 MDJ-Ⅲ-9 264 257/264 NoF10 Paddy floodwater in Japan BAH23190 97 MDJ-Ⅲ-10 264 260/264 NoF10 Paddy floodwater in Japan BAH23190 98 MDJ-Ⅲ-11 264 257/264 NoF10 Paddy floodwater in Japan BAH23190 97 MDJ-Ⅲ-12 264 257/264 NoF10 Paddy floodwater in Japan BAH23190 97 MDJ-Ⅲ-13 264 257/264 NoF10 Paddy floodwater in Japan BAH23190 97 MDJ-Ⅲ-14 264 247/264 Anabaena oryzae
Ind3Unpublished AEZ50165 94 MDJ-Ⅲ-15 264 258/264 NoF10 Paddy floodwater in Japan BAH23190 98 MDJ-Ⅲ-16 264 257/264 NoF10 Paddy floodwater in Japan BAH23190 97 MDJ-Ⅲ-17 264 257/264 NoF10 Paddy floodwater in Japan BAH23190 97 MDJ-Ⅲ-18 264 262/264 NoF7 Paddy floodwater in Japan BAH23187 99 MDJ-Ⅲ-19 264 260/264 Trebouxiophyceae
sp.MX-A201Highly acidic Geothermal
LakeYP_006666440 98 MDJ-Ⅲ-20 264 257/264 NoF10 Paddy floodwater in Japan BAH23190 97 MDJ-Ⅲ-21 264 261/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 99 MDJ-Ⅲ-22 264 259/264 CF (-N) 1 Paddy floodwater in Japan BAH23191 98 MDJ-Ⅲ-23 264 254/264 NoF10 Paddy floodwater in Japan BAH23190 96 NOTE: aThe length of amino acid residues; bAccession number of amino acid sequences Table S1. The closest relative of sequenced psbA clones from paddy waters in this study at the amino acid level.
Figure 1 个
Table 2 个
