Back Article

Abraham, M., Arroyo-Diaz, N.M., Li, Z., Zengel, J., Sakamoto, K., He, B., 2018. Role of Small Hydrophobic Protein of J Paramyxovirus in Virulence. J Virol. 92, e00653-18

Albarino, C.G., Foltzer, M., Towner, J.S., Rowe, L.A., Campbell, S., Jaramillo, C.M., Bird, B.H., Reeder, D.M., Vodzak, M.E., Rota, P., Metcalfe, M.G., Spiropoulou, C.F., Knust, B., Vincent, J.P., Frace, M.A., Nichol, S.T., Rollin, P.E., Stroher, U., 2014. Novel paramyxovirus associated with severe acute febrile disease, South Sudan and Uganda, 2012. Emerg Infect Dis. 20, 211-216.

Alkhovsky, S., Butenko, A., Eremyan, A., Shchetinin, A., 2018. Genetic characterization of bank vole virus (BaVV), a new paramyxovirus isolated from kidneys of bank voles in Russia. Arch Virol. 163, 755-759.

Audsley, M.D., Marsh, G.A., Lieu, K.G., Tachedjian, M., Joubert, D.A., Wang, L.F., Jans, D.A., Moseley, G.W., 2016. The immune evasion function of J and Beilong virus V proteins is distinct from that of other paramyxoviruses, consistent with their inclusion in the proposed genus Jeilongvirus. J Gen Virol. 97, 581-592.

Baele, G., Lemey, P., Bedford, T., Rambaut, A., Suchard, M.A., Alekseyenko, A. V., 2012. Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty. Mol Biol Evol. 29, 2157-2167.

Baele, G., Li, W.L., Drummond, A.J., Suchard, M.A., Lemey, P., 2013. Accurate model selection of relaxed molecular clocks in Bayesian phylogenetics. Mol Biol Evol. 30, 239-243.

Baker, K.S., Tachedjian, M., Barr, J., Marsh, G.A., Todd, S., Crameri, G., Crameri, S., Smith, I., Holmes, C.E.G., Suu-Ire, R., Fernandez-Loras, A., Cunningham, A.A., Wood, J.L.N., Wang, L.F., 2020. Achimota Pararubulavirus 3:A New Bat-Derived Paramyxovirus of the Genus Pararubulavirus. Viruses. 12, 1236.

Bielejec, F., Baele, G., Vrancken, B., Suchard, M.A., Rambaut, A., Lemey, P., 2016. SpreaD3:Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes. Mol Biol Evol. 33, 2167-2169.

Bowden, T.R., Bingham, J., Harper, J.A., Boyle, D.B., 2012. Menangle virus, a pteropid bat paramyxovirus infectious for pigs and humans, exhibits tropism for secondary lymphoid organs and intestinal epithelium in weaned pigs. J Gen Virol. 93, 1007-1016.

Branche, A.R., Falsey, A.R., 2016. Parainfluenza Virus Infection. Semin Respir Crit Care Med. 37, 538-554.

Brooks, F., Wood, A.R., Thomson, J., Deane, D., Everest, D.J., McInnes, C.J., 2014. Preliminary characterisation of Pentlands paramyxovirus-1,-2 and-3, three new paramyxoviruses of rodents. Vet Microbiol. 170, 391-397.

Burroughs, A.L., Tachedjian, M., Crameri, G., Durr, P.A., Marsh, G.A., Wang, L.F., 2015. Complete genome sequence of teviot paramyxovirus, a novel rubulavirus isolated from fruit bats in Australia. Genome Announc 3, e00177-15.

Calisher, C.H., Childs, J.E., Field, H.E., Holmes, K. v, Schountz, T., 2006. Bats:important reservoir hosts of emerging viruses. Clin Microbiol Rev. 19, 531-545.

Carlson, C.J., Albery, G.F., Merow, C., Trisos, C.H., Zipfel, C.M., Eskew, E.A., Olival, K.J., Ross, N., Bansal, S., 2022. Climate change increases cross-species viral transmission risk. Nature 607, 555-562.

Carlson, C.J., Zipfel, C.M., Garnier, R., Bansal, S., 2019. Global estimates of mammalian viral diversity accounting for host sharing. Nat Ecol Evol. 3, 1070-1075.

Chen, C., Chen, H., Zhang, Y., Thomas, H.R., Frank, M.H., He, Y., Xia, R., 2020. TBtools:An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data. Mol Plant. 13, 1194-1202.

Chen, L.H., Liu, B., Wu, Z.Q., Jin, Q., Yang, J., 2017. DRodVir:A resource for exploring the virome diversity in rodents. J Genet Genomics. 44, 259-264.

Chen, L.H., Liu, B., Yang, J., Jin, Q., 2014. DBatVir:the database of bat-associated viruses. Database-the Journal of Biological Databases and Curation. https://doi.org/ARTN bau021 10.1093/database/bau021

Choi, E.J., Ortega, V., Aguilar, H.C., 2020. Feline Morbillivirus, a New Paramyxovirus Possibly Associated with Feline Kidney Disease. Viruses 12, 501.

Ciancanelli, M.J., Volchkova, V.A., Shaw, M.L., Volchkov, V.E., Basler, C.F., 2009. Nipah virus sequesters inactive STAT1 in the nucleus via a P gene-encoded mechanism. J Virol. 83, 7828-7841.

de Souza, W.M., Fumagalli, M.J., Carrera, J.P., de Araujo, J., Cardoso, J.F., de Carvalho, C., Durigon, E.L., Queiroz, L.H., Faria, N.R., Murcia, P.R., Figueiredo, L.T.M., 2021. Paramyxoviruses from neotropical bats suggest a novel genus and nephrotropism. Infect Genet Evol. 95, 105041.

Drexler, J.F., Corman, V.M., Muller, M.A., Maganga, G.D., Vallo, P., Binger, T., Gloza-Rausch, F., Cottontail, V.M., Rasche, A., Yordanov, S., Seebens, A., Knornschild, M., Oppong, S., Adu Sarkodie, Y., Pongombo, C., Lukashev, A.N., Schmidt-Chanasit, J., Stocker, A., Carneiro, A.J., Erbar, S., Maisner, A., Fronhoffs, F., Buettner, R., Kalko, E.K., Kruppa, T., Franke, C.R., Kallies, R., Yandoko, E.R., Herrler, G., Reusken, C., Hassanin, A., Kruger, D.H., Matthee, S., Ulrich, R.G., Leroy, E.M., Drosten, C., 2012. Bats host major mammalian paramyxoviruses. Nat Commun. 3, 796.

Forth, L.F., Konrath, A., Klose, K., Schlottau, K., Hoffmann, K., Ulrich, R.G., Hoper, D., Pohlmann, A., Beer, M., 2018. A Novel Squirrel Respirovirus with Putative Zoonotic Potential. Viruses 10, 373.

Halpin, K., Hyatt, A.D., Fogarty, R., Middleton, D., Bingham, J., Epstein, J.H., Rahman, S.A., Hughes, T., Smith, C., Field, H.E., Daszak, P., Grp, H.E.R., 2011. Pteropid bats are confirmed as the reservoir hosts of henipaviruses:a comprehensive experimental study of virus transmission. Am J Trop Med Hyg. 85, 946-951.

Henrickson, K.J., 2003. Parainfluenza viruses. Clin Microbiol Rev. 16, 242-264.

Hoang, D.T., Chernomor, O., von Haeseler, A., Minh, B.Q., Vinh, L.S., 2018. UFBoot2:Improving the Ultrafast Bootstrap Approximation. Mol Biol Evol. 35, 518-522.

Hoberg, E.P., Brooks, D.R., 2015. Evolution in action:climate change, biodiversity dynamics and emerging infectious disease. Philos Trans R Soc Lond B Biol Sci. 370, 20130553.

Hviid, A., Rubin, S., Muhlemann, K., 2008. Mumps. Lancet 371, 932-944.

Hyndman, T.H., Marschang, R.E., Wellehan, J.F.X., Nicholls, P.K., 2012. Isolation and molecular identification of Sunshine virus, a novel paramyxovirus found in Australian snakes. Infect Genet Evol. 12, 1436-1446.

Jack, P.J., Boyle, D.B., Eaton, B.T., Wang, L.F., 2005. The complete genome sequence of J virus reveals a unique genome structure in the family Paramyxoviridae. J Virol. 79, 10690-10700.

Johnson, R.I., Tachedjian, M., Rowe, B., Clayton, B.A., Layton, R., Bergfeld, J., Wang, L.F., Marsh, G.A., 2018. Alston Virus, a Novel Paramyxovirus Isolated from Bats Causes Upper Respiratory Tract Infection in Experimentally Challenged Ferrets. Viruses 10, 675.

Kalyaanamoorthy, S., Minh, B.Q., Wong, T.K.F., von Haeseler, A., Jermiin, L.S., 2017. ModelFinder:fast model selection for accurate phylogenetic estimates. Nat Methods 14, 587-589.

Katoh, K., Standley, D.M., 2013. MAFFT multiple sequence alignment software version 7:improvements in performance and usability. Mol Biol Evol. 30, 772-780.

Lambeth, L.S., Yu, M., Anderson, D.E., Crameri, G., Eaton, B.T., Wang, L.F., 2009. Complete genome sequence of Nariva virus, a rodent paramyxovirus. Arch Virol. 154, 199-207.

Larsen, B.B., Gryseels, S., Otto, H.W., Worobey, M., 2021. Evolution and diversity of bat and rodent Paramyxoviruses from North America. J Virol. 96, e0109821.

Lau, S.K., Woo, P.C., Li, K.S., Huang, Y., Tsoi, H.W., Wong, B.H., Wong, S.S., Leung, S.Y., Chan, K.H., Yuen, K.Y., 2005. Severe acute respiratory syndrome coronavirus-like virus in Chinese horseshoe bats. Proc Natl Acad Sci U S A. 102, 14040-14045.

Lau, S.K., Woo, P.C., Wong, B.H., Wong, A.Y., Tsoi, H.W., Wang, M., Lee, P., Xu, H., Poon, R.W., Guo, R., Li, K.S., Chan, K.H., Zheng, B.J., Yuen, K.Y., 2010. Identification and complete genome analysis of three novel paramyxoviruses, Tuhoko virus 1, 2 and 3, in fruit bats from China. Virology 404, 106-116.

Lau, S.K.P., Woo, P.C.Y., Wu, Y., Wong, A.Y.P., Wong, B.H.L., Lau, C.C.Y., Fan, R.Y.Y., Cai, J.P., Tsoi, H.W., Chan, K.H., Yuen, K.Y., 2013. Identification and characterization of a novel paramyxovirus, porcine parainfluenza virus 1, from deceased pigs. J Gen Virol. 94, 2184-2190.

Leal, E., Liu, C., Zhao, Z., Deng, Y., Villanova, F., Liang, L., Li, J., Cui, S., 2019. Isolation of a Divergent Strain of Bovine Parainfluenza Virus Type 3 (BPIV3) Infecting Cattle in China. Viruses 11, 489.

Lee, S.H., No, J.S., Kim, K., Budhathoki, S., Park, K., Lee, G.Y., Cho, S., Kim, B.H., Cho, S., Kim, J., Lee, J., Cho, S.H., Kim, H.C., Klein, T.A., Uhm, C.S., Kim, W.K., Song, J.W., 2021. Novel Paju Apodemus paramyxovirus 1 and 2, harbored by Apodemus agrarius in the Republic of Korea. Virology 562, 40-49.

Lemey, P., Rambaut, A., Drummond, A.J., Suchard, M.A., 2009. Bayesian phylogeography finds its roots. PLoS Comput Biol. 5, e1000520.

Leroy, E.M., Kumulungui, B., Pourrut, X., Rouquet, P., Hassanin, A., Yaba, P., Delicat, A., Paweska, J.T., Gonzalez, J.P., Swanepoel, R., 2005. Fruit bats as reservoirs of Ebola virus. Nature 438, 575-576.

Letko, M., Seifert, S.N., Olival, K.J., Plowright, R.K., Munster, V.J., 2020. Bat-borne virus diversity, spillover and emergence. Nat Rev Microbiol. 18, 461-471.

Li, W., Mao, L., Cheng, S., Wang, Q., Huang, J., Deng, J., Wang, Z., Zhang, W., Yang, L., Hao, F., Ding, Y., Sun, Y., Wei, J., Jiang, P., Jiang, J., 2014. A novel parainfluenza virus type 3 (PIV3) identified from goat herds with respiratory diseases in eastern China. Vet Microbiol. 174, 100-106.

Li, Z., Hung, C., Paterson, R.G., Michel, F., Fuentes, S., Place, R., Lin, Y., Hogan, R.J., Lamb, R.A., He, B., 2015. Type II integral membrane protein, TM of J paramyxovirus promotes cell-to-cell fusion. Proc Natl Acad Sci U S A. 112, 12504-12509.

Marsh, G.A., de Jong, C., Barr, J.A., Tachedjian, M., Smith, C., Middleton, D., Yu, M., Todd, S., Foord, A.J., Haring, V., Payne, J., Robinson, R., Broz, I., Crameri, G., Field, H.E., Wang, L.F., 2012. Cedar virus:a novel Henipavirus isolated from Australian bats. PLoS Pathog. 8, e1002836.

Marsh, G.A., Wang, L.F., 2012. Hendra and Nipah viruses:why are they so deadly? Curr Opin Virol. 2, 242-247.

Memish, Z.A., Mishra, N., Olival, K.J., Fagbo, S.F., Kapoor, V., Epstein, J.H., Alhakeem, R., Durosinloun, A., al Asmari, M., Islam, A., Kapoor, A., Briese, T., Daszak, P., al Rabeeah, A.A., Lipkin, W.I., 2013. Middle East respiratory syndrome coronavirus in bats, Saudi Arabia. Emerg Infect Dis. 19, 1819-1823.

Middleton, D., 2014. Hendra virus. Vet Clin North Am Equine Pract. 30, 579-589.

Miller, P.J., Boyle, D.B., Eaton, B.T., Wang, L.F., 2003. Full-length genome sequence of Mossman virus, a novel paramyxovirus isolated from rodents in Australia. Virology 317, 330-344.

Morales-Castilla, I., Pappalardo, P., Farrell, M.J., Aguirre, A.A., Huang, S., Gehman, A.M., Dallas, T., Gravel, D., Davies, T.J., 2021. Forecasting parasite sharing under climate change. Philos Trans R Soc Lond B Biol Sci. 376, 20200360.

Moss, W.J., 2017. Measles. Lancet 390, 2490-2502.

Nguyen, L.T., Schmidt, H.A., von Haeseler, A., Minh, B.Q., 2015. IQ-TREE:a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32, 268-274.

Noh, J.Y., Jeong, D.G., Yoon, S.W., Kim, J.H., Choi, Y.G., Kang, S.Y., Kim, H.K., 2018. Isolation and characterization of novel bat paramyxovirus B16-40 potentially belonging to the proposed genus Shaanvirus. Sci Rep. 8, 12533.

Olival, K.J., Hosseini, P.R., Zambrana-Torrelio, C., Ross, N., Bogich, T.L., Daszak, P., 2017. Host and viral traits predict zoonotic spillover from mammals. Nature 546, 646-650.

Rambaut, A., Drummond, A.J., Xie, D., Baele, G., Suchard, M.A., 2018. Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7. Syst Biol. 67, 901-904.

Rambaut, A., Lam, T.T., Carvalho, L.M., Pybus, O.G., 2016. Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen). Virus Evol. 2, vew007.

Rima, B., Balkema-Buschmann, A., Dundon, W.G., Duprex, P., Easton, A., Fouchier, R., Kurath, G., Lamb, R., Lee, B., Rota, P., Wang, L., Ictv Report, C., 2019. ICTV Virus Taxonomy Profile:Paramyxoviridae. J Gen Virol. 100, 1593-1594.

Rissanen, I., Ahmed, A.A., Azarm, K., Beaty, S., Hong, P., Nambulli, S., Duprex, W.P., Lee, B., Bowden, T.A., 2017. Idiosyncratic Mojiang virus attachment glycoprotein directs a host-cell entry pathway distinct from genetically related henipaviruses. Nat Commun. 8, 16060.

Sakaguchi, S., Nakagawa, S., Mitsuhashi, S., Ogawa, M., Sugiyama, K., Tamukai, K., Koide, R., Katayama, Y., Nakano, T., Makino, S., Imanishi, T., Miyazawa, T., Mizutani, T., 2020. Molecular characterization of feline paramyxovirus in Japanese cat populations. Arch Virol. 165, 413-418.

Satterfield, B.A., Cross, R.W., Fenton, K.A., Agans, K.N., Basler, C.F., Geisbert, T.W., Mire, C.E., 2015. The immunomodulating V and W proteins of Nipah virus determine disease course. Nat Commun. 6, 7483.

Schountz, T., Campbell, C., Wagner, K., Rovnak, J., Martellaro, C., DeBuysscher, B.L., Feldmann, H., Prescott, J., 2019. Differential Innate Immune Responses Elicited by Nipah Virus and Cedar Virus Correlate with Disparate In Vivo Pathogenesis in Hamsters. Viruses 11, 291.

Sieg, M., Heenemann, K., Ruckner, A., Burgener, I., Oechtering, G., Vahlenkamp, T.W., 2015. Discovery of new feline paramyxoviruses in domestic cats with chronic kidney disease. Virus Genes 51, 294-297.

Smith, I., Wang, L.F., 2013. Bats and their virome:an important source of emerging viruses capable of infecting humans. Curr Opin Virol. 3, 84-91.

Suchard, M.A., Lemey, P., Baele, G., Ayres, D.L., Drummond, A.J., Rambaut, A., 2018. Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10. Virus Evol. 4, vey016.

Swanepoel, R., Smit, S.B., Rollin, P.E., Formenty, P., Leman, P.A., Kemp, A., Burt, F.J., Grobbelaar, A.A., Croft, J., Bausch, D.G., Zeller, H., Leirs, H., Braack, L.E., Libande, M.L., Zaki, S., Nichol, S.T., Ksiazek, T.G., Paweska, J.T., International, S., Technical Committee for Marburg Hemorrhagic Fever Control in the Democratic Republic of, C., 2007. Studies of reservoir hosts for Marburg virus. Emerg Infect Dis. 13, 1847-1851.

Tong, S., Chern, S.W., Li, Y., Pallansch, M.A., Anderson, L.J., 2008. Sensitive and broadly reactive reverse transcription-PCR assays to detect novel paramyxoviruses. J Clin Microbiol. 46, 2652-2658.

Vanmechelen, B., Bletsa, M., Laenen, L., Lopes, A.R., Vergote, V., Beller, L., Deboutte, W., Korva, M., Avsic Zupanc, T., Gouy de Bellocq, J., Gryseels, S., Leirs, H., Lemey, P., Vrancken, B., Maes, P., 2018. Discovery and genome characterization of three new Jeilongviruses, a lineage of paramyxoviruses characterized by their unique membrane proteins. BMC Genomics. 19, 617.

Vanmechelen, B., Meurs, S., Zisi, Z., Gouy de Bellocq, J., Bletsa, M., Lemey, P., Maes, P., 2021. Genome Sequence of Ruloma Virus, a Novel Paramyxovirus Clustering Basally to Members of the Genus Jeilongvirus. Microbiol Resour Announc. 10, e00325-21.

Vanmechelen, B., Vergote, V., Merino, M., Verbeken, E., Maes, P., 2020. Common occurrence of Belerina virus, a novel paramyxovirus found in Belgian hedgehogs. Sci Rep. 10, 19341.

Wang, L.F., Shi, Z., Zhang, S., Field, H., Daszak, P., Eaton, B.T., 2006. Review of bats and SARS. Emerg Infect Dis. 12, 1834-1840.

Woo, P.C., Lau, S.K., Wong, B.H., Wong, A.Y., Poon, R.W., Yuen, K.Y., 2011. Complete genome sequence of a novel paramyxovirus, Tailam virus, discovered in Sikkim rats. J Virol. 85, 13473-13474.

Wu, Z., Han, Y., Wang, Y., Liu, B., Zhao, L., Zhang, J., Su, H., Zhao, W., Liu, L., Bai, S., Dong, J., Sun, L., Zhu, Y., Zhou, S., Song, Y., Sui, H., Yang, J., Wang, J., Zhang, S., Qian, Z., Jin, Q., 2022. A comprehensive survey of bat sarbecoviruses across China in relation to the origins of SARS-CoV and SARS-CoV-2. Natl Sci Rev. nwac213.

Wu, Z., Ren, X., Yang, L., Hu, Y., Yang, J., He, G., Zhang, J., Dong, J., Sun, L., Du, J., Liu, L., Xue, Y., Wang, J., Yang, F., Zhang, S., Jin, Q., 2012. Virome analysis for identification of novel mammalian viruses in bat species from Chinese provinces. J Virol. 86, 10999-11012.

Wu, Z., Yang, L., Ren, X., He, G., Zhang, J., Yang, J., Qian, Z., Dong, J., Sun, L., Zhu, Y., Du, J., Yang, F., Zhang, S., Jin, Q., 2016. Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases. ISME J. 10, 609-620.

Wu, Z., Yang, L., Yang, F., Ren, X., Jiang, J., Dong, J., Sun, L., Zhu, Y., Zhou, H., Jin, Q., 2014. Novel Henipa-like virus, Mojiang Paramyxovirus, in rats, China, 2012. Emerg Infect Dis. 20, 1064-1066.

Wu, Z.Q., Han, Y.L., Liu, B., Li, H.Y., Zhu, G.J., Latinne, A., Dong, J., Sun, L.L., Su, H.X., Liu, L.G., Du, J., Zhou, S.Y., Chen, M.X., Kritiyakan, A., Jittapalapong, S., Chaisiri, K., Buchy, P., Duong, V., Yang, J.A., Jiang, J.Y., Xu, X., Zhou, H.N., Yang, F., Irwin, D.M., Morand, S., Daszak, P., Wang, J.W., Jin, Q., 2021. Decoding the RNA viromes in rodent lungs provides new insight into the origin and evolutionary patterns of rodent-borne pathogens in Mainland Southeast Asia. Microbiome 9, 18.

Wu, Z.Q., Lu, L., Du, J., Yang, L., Ren, X.W., Liu, B., Jiang, J.Y., Yang, J., Dong, J., Sun, L.L., Zhu, Y.F., Li, Y.H., Zheng, D.D., Zhang, C., Su, H.X., Zheng, Y.T., Zhou, H.N., Zhu, G.J., Li, H.Y., Chmura, A., Yang, F., Daszak, P., Wang, J.W., Liu, Q.Y., Jin, Q., 2018. Comparative analysis of rodent and small mammal viromes to better understand the wildlife origin of emerging infectious diseases. Microbiome 6, 178.

Yang, J., Yang, F., Ren, L.L., Xiong, Z.H., Wu, Z.Q., Dong, J., Sun, L.L., Zhang, T., Hu, Y.F., Du, J., Wang, J.W., Jin, Q., 2011. Unbiased Parallel Detection of Viral Pathogens in Clinical Samples by Use of a Metagenomic Approach. J Clin Microbiol. 49, 3463-3469.

Zhang, X.A., Li, H., Jiang, F.C., Zhu, F., Zhang, Y.F., Chen, J.J., Tan, C.W., Anderson, D.E., Fan, H., Dong, L.Y., Li, C., Zhang, P.H., Li, Y., Ding, H., Fang, L.Q., Wang, L.F., Liu, W., 2022. A Zoonotic Henipavirus in Febrile Patients in China. N Engl J Med. 387, 470-472.