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Province Total Mosaic Leaf Malformation Necrotic Dwarf Plant 2010 2011 2010 2011 2010 2011 2010 2011 2010 2011 Anhui 11 15 4 7 4 4 2 3 1 1 Fujian 12 15 5 8 4 4 3 3 0 0 Guangxi 14 13 7 8 5 3 2 1 0 1 Guizhou 17 21 7 13 7 5 3 2 0 1 Henan 11 31 5 15 3 10 2 4 1 2 Heilongjiang 11 12 6 4 4 5 1 2 0 1 Hubei 13 27 6 13 4 8 2 4 1 2 Hunan 15 22 7 11 5 7 2 3 1 1 Liaoning 10 15 5 5 2 6 3 4 0 0 Shandong 12 16 6 8 4 6 2 2 0 0 Shaanxi 16 33 7 14 6 12 2 4 1 3 Yunnan 12 35 5 15 4 12 2 5 1 3 Total 154 255 70 121 52 82 26 37 6 15 Table S1. Disease symptoms of 409 tobacco leaf samples from 12 provinces in China
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TMV Anhui_1 2010 Anhui KJ508018 Fujian_1 2010 Fujian KJ508019 Guangxi_1 2010 Guangxi KJ508020 Guangxi_2 2011 Guangxi KJ508021 Guizhou_1 2010 Guizhou KJ508022 Guizhou_2 2011 Guizhou KJ508023 Heilongjiang_1 2010 Heilongjiang KJ508024 Henan_1 2010 Henan KJ508025 Henan_2 2011 Henan KJ508026 Hubei_1 2010 Hubei KJ508027 Hubei_2 2011 Hubei KJ508028 Hunan_1 2010 Hunan KJ508029 Hunan_2 2011 Hunan KJ508030 Liaoning_1 2010 Liaoning KJ508031 Shaanxi_1 2010 Shaanxi KJ508032 Shaanxi_2 2010 Shaanxi KJ508033 Shandong_1 2010 Shandong KJ508034 Shandong_2 2011 Shandong KJ508035 Yunnan_1 2010 Yunnan KJ508018 Yunnan_2 2011 Yunnan KJ508019 CMV Anhui_1 2010 Anhui KJ513380 Fujian_1 2010 Fujian KJ513381 Fujian_2 2010 Fujian KJ513382 Guangxi_1 2010 Guangxi KJ513383 Guizhou_1 2010 Guizhou KJ513384 Guizhou_2 2010 Guizhou KJ513385 Heilongjiang_1 2010 Heilongjiang KJ513386 Henan_1 2010 Henan KJ513387 Henan_2 2010 Henan KJ513388 Hubei_1 2010 Hubei KJ513389 Hubei_2 2011 Hubei KJ513390 Hunan_1 2010 Hunan KJ513391 Hunan_2 2011 Hunan KJ513392 Liaoning_1 2010 Liaoning KJ513393 Liaoning_1 2010 Liaoning KJ513397 Shaanxi_1 2010 Shaanxi KJ513400 Shaanxi_2 2011 Shaanxi KJ513403 Shandong_1 2010 Shandong KJ513405 Shandong_2 2011 Shandong KJ513406 Yunnan_1 2010 Yunnan KJ513409 Yunnan_2 2011 Yunnan KJ513410 TEV Fujian_1 2010 Fujian KJ513394 Fujian_2 2010 Fujian KJ513395 Heilongjiang_1 2010 Heilongjiang KJ513396 Henan_1 2010 Henan KJ513398 Henan_2 2010 Henan KJ513399 Hubei_1 2010 Hubei KJ513401 Hubei_2 2011 Hubei KJ513402 Hunan_1 2010 Hunan KJ513404 Hunan_2 2011 Hunan KJ513407 Shaanxi_1 2010 Shaanxi KJ513408 Shaanxi_2 2011 Shaanxi KJ513411 Shandong_1 2010 Shandong KJ513412 Shandong_2 2010 Shandong KJ513413 Yunnan_1 2010 Yunnan KJ513414 Yunnan_2 2010 Yunnan KJ513415 PVY Anhui_1 2010 Anhui KJ513416 Anhui_2 2010 Anhui KJ513417 Fujian_1 2010 Fujian KJ513418 Guangxi_1 2010 Guangxi KJ513419 Guangxi_2 20110 Guangxi KJ513421 Guizhou_1 2010 Guizhou KJ513422 Guizhou_2 2011 Guizhou KJ513423 Heilongjiang_1 2010 Heilongjiang KJ513425 Heilongjiang_2 2010 Heilongjiang KJ513426 Henan_1 2010 Henan KJ513427 Henan_2 2010 Henan KJ513429 Hunan_1 2010 Hunan KJ513420 Hunan_2 2010 Hunan KJ513424 Liaoning_1 2010 Liaoning KJ513428 Liaoning_2 2010 Liaoning KJ513433 Shaanxi_1 2010 Shaanxi KJ513435 Shaanxi_2 2011 Shaanxi KJ513436 Shandong_1 2010 Shandong KJ513430 Shandong_2 2011 Shandong KJ513432 Yunnan_1 2010 Yunnan KJ513434 Yunnan_2 2011 Yunnan KJ513416 Table S2. The time, geographical origin and accession number of all isolates used in this study
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Virus Breakpoint Recombinanta Parentals Method (Average P value) Start End Major Minor R G B M C S 3Seq CMV 18 603 Guizhou_1 (KJ513384)b Fujian_1 (KJ51338) 97.4% Shaanxi_1 (KJ513400) 100% 9.46×10-11 1.08×10-9 - 3.98×10-03 3.75×10-03 - 7.16×10-10 TEV 261 498 DQ871331.1 (DQ871331.1) Hubei_2 (KJ51340) 99.1% JX512813.1 (JX512813.1) 99% 3.44×10-03 - - 2.03×10-07 1.00×10-07 - 1.43×10-09 PVY 322 434 Anhui_2 (KJ513417) Guizhou_1 (KJ51342) 98.8% Guangxi_1 (KJ5134T9) 99.5% 1.38×10-03 - 1.38×10-03 2.45×10-03 1.28×10-03 1.39×10-03 1.28×10-03 Note:a only events supported by at least four of the different RDP3-implemented methods. The support probability for each method is shown.b GenBank accession number. Table S3. Putative recombination events of CP gene in CMV, TEV and PVY populations
Figure 2 个
Table 3 个
