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Table 1. SNPs associate with tumors
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Table 2. Clinical characterizations of EBVaGC/EBVnGC patients and healthy controls
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Table 3. Genotype and allele frequencies of FLG (rs2065955) in EBVaGCs and EBVnGCs
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Table 4. Distribution of genotype and allele of FLG in EBVaGC, EBVnGC, and control samples
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Table 5. FLG protein expression level in EBVnGC and EBVaGC tissues
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Chromosome Position Reference Region Transcript Name Gene_id Gene_name AGS1_AGS AGS2_AGS AGSEBV1_AGSEBV AGSEBV2_AGSEBV AGS1_AGS(Synonymous/Non) AGS2_AGS(Synonymous/Non) AGSEBV1_AGSEBV(Synonymous/Non) AGSEBV2_AGSEBV(Synonymous/Non) rs_id Regulation chr1 10474430 A intronic - - - - A->T; hom; QUAL=96.3;DP=5 A->T; hom; QUAL=134;DP=10 - - - - rs35759975 no chr1 109513497 C UTR3 - - - - C->T; hom; QUAL=140;DP=6 C->T; hom; QUAL=32.8;DP=2 - - - - rs507776 no chr1 109606711 T intronic - - - - T->C; het; QUAL=131;DP=29 T->C; het; QUAL=3.01;DP=15 - - - - no rs id no chr1 11249132 G intronic - - - - G->C; hom; QUAL=10.4;DP=1 G->C; hom; QUAL=38.8;DP=2 - - - - rs1034528 no chr1 113233051 A intronic - - - - A->G; het; QUAL=20;DP=8 A->G; hom; QUAL=131;DP=9 - - - - no rs id no chr1 113492862 C intronic - - - - C->T; hom; QUAL=66;DP=3 C->T; hom; QUAL=32.8;DP=2 - - - - rs4301628 no chr1 120163531 T UTR3 - - - - T->C; het; QUAL=140;DP=45 T->C; hom; QUAL=97.3;DP=5 - - - - rs10754416 no chr1 12072518 G UTR3 - - - - G->C; hom; QUAL=94.3;DP=5 G->C; het; QUAL=75;DP=18 - - - - rs3088064 no chr1 121118830 G ncRNA_intronic - - - - G->A; hom; QUAL=35.8;DP=2 G->A; hom; QUAL=60;DP=3 - - - - rs140373583 no chr1 1288823 A UTR3 - - - - A->G; hom; QUAL=28.8;DP=2 A->G; hom; QUAL=27.8;DP=2 - - - - rs2296471 no chr1 1311378 T upstream - - - - T->A; hom; QUAL=169;DP=18 T->A; hom; QUAL=66;DP=3 - - - - rs2477776 no chr1 1345556 T ncRNA_exonic - - - - T->C; het; QUAL=46;DP=9 T->C; hom; QUAL=133;DP=7 - - - - no rs id no chr1 1345583 C ncRNA_exonic - - - - C->A; het; QUAL=37;DP=9 C->A; hom; QUAL=136;DP=8 - - - - no rs id no chr1 1345645 A ncRNA_exonic - - - - A->C; het; QUAL=44;DP=9 A->C; hom; QUAL=173;DP=9 - - - - no rs id no chr1 142688831 C ncRNA_exonic - - - - C->A; hom; QUAL=42.8;DP=2 C->A; hom; QUAL=104;DP=5 - - - - rs146967546 no chr1 143465106 G ncRNA_exonic - - - - G->A; hom; QUAL=141;DP=10 G->A; het; QUAL=4.77;DP=1 - - - - rs201950931 no chr1 143918910 T ncRNA_intronic - - - - T->G; hom; QUAL=96.3;DP=5 T->G; hom; QUAL=7.8;DP=1 - - - - rs374946176 no chr1 144053567 C ncRNA_exonic - - - - C->T; het; QUAL=32;DP=5 C->T; het; QUAL=9.52;DP=28 - - - - rs202144114 no chr1 144931087 T exonic ENST00000313431.9 ENSG00000178104 PDE4DIP - - T->C; het; QUAL=143;DP=18 T->C; het; QUAL=15.1;DP=9 - - nonsynonymous SNV nonsynonymous SNV rs41315684 no chr1 145101750 G ncRNA_intronic - - - - G->A; hom; QUAL=98.5;DP=4 G->A; hom; QUAL=80.5;DP=6 - - - - rs2596271 no chr1 145101767 A ncRNA_intronic - - - - A->G; hom; QUAL=109;DP=4 A->G; hom; QUAL=27.8;DP=2 - - - - rs2794064 no chr1 145282582 T UTR3 - - - - T->G; hom; QUAL=14.2;DP=28 T->G; het; QUAL=14.2;DP=12 - - - - rs1062341 no chr1 147094204 G exonic ENST00000234739.3 ENSG00000116128 BCL9 - - G->A; hom; QUAL=38.8;DP=2 G->A; het; QUAL=104;DP=13 - - nonsynonymous SNV nonsynonymous SNV no rs id no chr1 148181875 C intergenic - - - - C->T; hom; QUAL=222;DP=30 C->T; het; QUAL=174;DP=12 - - - - rs199585823 no chr1 149577065 A ncRNA_exonic - - - - A->G; het; QUAL=4.77;DP=1 A->G; hom; QUAL=94.3;DP=5 - - - - no rs id no chr1 152005482 C ncRNA_intronic - - - - C->G; hom; QUAL=94.1;DP=6 C->G; het; QUAL=17.1;DP=16 - - - - rs2999550 no chr1 152161354 T ncRNA_intronic - - - - T->C; hom; QUAL=7.8;DP=1 T->C; hom; QUAL=122;DP=8 - - - - rs1390490 no chr1 152193052 A exonic ENST00000368801.2 ENSG00000197915 HRNR - - A->G; hom; QUAL=132;DP=10 A->G; hom; QUAL=172;DP=16 - - nonsynonymous SNV nonsynonymous SNV rs6587650 no chr1 152277055 C exonic ENST00000368799.1 ENSG00000143631 FLG - - C->G; hom; QUAL=66;DP=3 C->G; hom; QUAL=19.8;DP=2 - - stoploss SNV stoploss SNV rs2065955 no chr1 153497596 G intergenic - - - - G->A; hom; QUAL=117;DP=6 G->A; hom; QUAL=37;DP=14 - - - - rs7521972 no chr1 153585584 G upstream - - - - G->A; het; QUAL=135;DP=15 G->A; hom; QUAL=75.5;DP=4 - - - - rs9700179 no chr1 153608116 G intronic - - - - G->C; hom; QUAL=7.8;DP=1 G->C; het; QUAL=112;DP=8 - - - - rs28518786 no chr1 155174106 C ncRNA_intronic - - - - C->T; het; QUAL=75;DP=7 C->T; hom; QUAL=94.1;DP=8 - - - - rs386556537 no chr1 155294274 A exonic ENST00000368347.4 ENSG00000160753 RUSC1 - - A->G; hom; QUAL=119;DP=7 A->G; hom; QUAL=122;DP=8 - - synonymous SNV synonymous SNV rs914616 no chr1 155817788 T intronic - - - - T->C; hom; QUAL=109;DP=9 T->C; hom; QUAL=157;DP=10 - - - - rs11264417 no chr1 156716689 G intronic - - - - G->A; hom; QUAL=118;DP=11 G->A; hom; QUAL=74.5;DP=4 - - - - rs78365002 no chr1 160695906 C intergenic - - - - C->T; hom; QUAL=7.8;DP=1 C->T; het; QUAL=28;DP=14 - - - - rs500188 no chr1 160966393 T UTR3 - - - - T->C; het; QUAL=81;DP=53 T->C; het; QUAL=147;DP=40 - - - - rs1127844 no chr1 160966418 T UTR3 - - - - T->C; het; QUAL=8.64;DP=31 T->C; het; QUAL=80;DP=50 - - - - no rs id no chr1 161403149 C intergenic - - - - C->A; hom; QUAL=35.8;DP=2 C->A; hom; QUAL=222;DP=16 - - - - rs191478200 no chr1 161736473 A intronic - - - - A->G; hom; QUAL=68;DP=3 A->G; hom; QUAL=169;DP=15 - - - - rs2271010 no chr1 161752479 T intronic - - - - T->C; hom; QUAL=80.5;DP=4 T->C; hom; QUAL=7.8;DP=1 - - - - rs2134692 no chr1 167514705 G intronic - - - - G->A; hom; QUAL=80.5;DP=4 G->A; hom; QUAL=28;DP=8 - - - - rs4657668 no chr1 16840541 A upstream; downstream - - - - A->G; het; QUAL=6.98;DP=13 A->G; het; QUAL=92;DP=35 - - - - rs56140239 no chr1 16840567 A upstream; downstream - - - - A->G; het; QUAL=28;DP=14 A->G; het; QUAL=146;DP=25 - - - - rs55869970 no chr1 175125036 C intergenic - - - - C->T; hom; QUAL=157;DP=18 C->T; hom; QUAL=103;DP=4 - - - - rs6425323 no chr1 17541375 G intronic - - - - G->A; hom; QUAL=164;DP=14 G->A; het; QUAL=4.77;DP=1 - - - - rs143489722 no chr1 17541390 G intronic - - - - G->A; hom; QUAL=168;DP=14 G->A; hom; QUAL=7.8;DP=1 - - - - no rs id no chr1 17550121 G exonic ENST00000375471.4 ENSG00000142623 PADI1 - - G->A; het; QUAL=225;DP=105 G->A; het; QUAL=225;DP=63 - - synonymous SNV synonymous SNV rs2293912 no chr1 17550225 T intronic - - - - T->C; hom; QUAL=46;DP=3 T->C; hom; QUAL=171;DP=8 - - - - rs3003481 no chr1 17550314 G intronic - - - - G->A; hom; QUAL=113;DP=7 G->A; hom; QUAL=35.8;DP=2 - - - - rs2293914 no chr1 17550601 G intronic - - - - G->A; hom; QUAL=168;DP=14 G->A; hom; QUAL=222;DP=20 - - - - rs3003482 no chr1 17552287 G intronic - - - - G->A; hom; QUAL=130;DP=8 G->A; hom; QUAL=147;DP=9 - - - - rs141463441 no chr1 17555508 G exonic ENST00000375471.4 ENSG00000142623 PADI1 - - G->T; hom; QUAL=222;DP=78 G->T; hom; QUAL=222;DP=41 - - synonymous SNV synonymous SNV rs2977234 no chr1 179074599 A UTR3 - - - - A->C; het; QUAL=29;DP=5 A->C; het; QUAL=106;DP=10 - - - - rs117228532 no chr1 179263003 G UTR5 - - - - G->A; hom; QUAL=103;DP=7 G->A; hom; QUAL=87.5;DP=4 - - - - rs11545566 no chr1 180472298 C upstream - - - - C->T; hom; QUAL=131;DP=10 C->T; hom; QUAL=57;DP=3 - - - - rs3806301 no chr1 180947608 T intronic - - - - T->G; hom; QUAL=182;DP=26 T->G; hom; QUAL=10.4;DP=1 - - - - rs4652545 no chr1 183212171 C intronic - - - - C->A; hom; QUAL=222;DP=27 C->A; hom; QUAL=41.8;DP=2 - - - - rs3768594 no chr1 200959302 G exonic ENST00000332129.2 ENSG00000116852 KIF21B - - G->A; hom; QUAL=153;DP=15 G->A; hom; QUAL=222;DP=21 - - nonsynonymous SNV nonsynonymous SNV rs2297911 no chr1 20238466 A UTR3 - - - - A->G; hom; QUAL=222;DP=23 A->G; het; QUAL=225;DP=55 - - - - rs17401847 no chr1 203766395 T UTR5 - - - - T->C; hom; QUAL=158;DP=17 T->C; hom; QUAL=221;DP=14 - - - - rs6693481 no chr1 204291443 G intronic - - - - G->A; hom; QUAL=130;DP=9 G->A; hom; QUAL=41.8;DP=2 - - - - rs12134661 no chr1 204520209 C UTR3 - - - - C->T; hom; QUAL=98.5;DP=4 C->T; hom; QUAL=222;DP=34 - - - - rs4951396 no chr1 205415817 C intronic - - - - C->T; hom; QUAL=138;DP=11 C->T; hom; QUAL=10.4;DP=1 - - - - rs913726 no chr1 206139240 A UTR5 - - - - A->C; hom; QUAL=67.3;DP=5 A->C; hom; QUAL=117;DP=6 - - - - no rs id no chr1 207506649 C intronic - - - - C->T; hom; QUAL=147;DP=9 C->T; hom; QUAL=105;DP=6 - - - - rs11120733 no chr1 207519137 A intronic - - - - A->G; hom; QUAL=63;DP=3 A->G; hom; QUAL=222;DP=23 - - - - rs6673138 no chr1 207519231 G intronic - - - - G->A; hom; QUAL=87.5;DP=4 G->A; hom; QUAL=121;DP=7 - - - - rs1257727 no chr1 207522558 C intronic - - - - C->T; hom; QUAL=38.8;DP=2 C->T; hom; QUAL=35.8;DP=2 - - - - rs11120746 no chr1 21084454 T intronic - - - - T->C; hom; QUAL=10.4;DP=1 T->C; hom; QUAL=68;DP=3 - - - - no rs id no chr1 21657769 C intronic - - - - C->T; hom; QUAL=117;DP=6 C->T; hom; QUAL=135;DP=14 - - - - rs213041 no chr1 21657852 A intronic - - - - A->G; hom; QUAL=106;DP=6 A->G; hom; QUAL=168;DP=14 - - - - rs213042 no chr1 219377409 G intronic - - - - G->T; hom; QUAL=154;DP=16 G->T; hom; QUAL=96.1;DP=6 - - - - rs4846537 no chr1 22209880 G intronic - - - - G->A; hom; QUAL=96.3;DP=5 G->A; hom; QUAL=132;DP=8 - - - - rs2454291 no chr1 224343762 C intronic - - - - C->T; hom; QUAL=154;DP=10 C->T; hom; QUAL=35.8;DP=2 - - - - rs6665085 no chr1 226369752 A intronic - - - - A->G; hom; QUAL=89.5;DP=4 A->G; hom; QUAL=27.8;DP=2 - - - - rs3008184 no chr1 227472964 A intronic - - - - A->C; hom; QUAL=7.8;DP=1 A->C; hom; QUAL=222;DP=18 - - - - rs16847582 no chr1 232564162 T exonic ENST00000262861.4 ENSG00000116991 SIPA1L2 - - T->C; het; QUAL=193;DP=22 T->C; hom; QUAL=35.8;DP=2 - - nonsynonymous SNV nonsynonymous SNV rs34110867 no chr1 2339115 T intronic - - - - T->C; hom; QUAL=7.8;DP=1 T->C; het; QUAL=4.77;DP=1 - - - - rs2494599 no chr1 24110081 A intronic - - - - A->G; hom; QUAL=222;DP=18 A->G; hom; QUAL=60;DP=3 - - - - no rs id no chr1 244823323 G intronic - - - - G->C; hom; QUAL=10.4;DP=1 G->C; hom; QUAL=147;DP=9 - - - - rs6687556 no chr1 244927751 G intergenic - - - - G->A; het; QUAL=18.1;DP=19 G->A; hom; QUAL=7.8;DP=1 - - - - rs1807991 no chr1 246431930 T intronic - - - - T->C; hom; QUAL=155;DP=10 T->C; hom; QUAL=10.4;DP=1 - - - - no rs id no chr1 246651577 A intronic - - - - A->G; hom; QUAL=10.4;DP=1 A->G; hom; QUAL=146;DP=10 - - - - rs12567142 no chr1 247216831 A intronic - - - - A->G; hom; QUAL=41.8;DP=2 A->G; hom; QUAL=222;DP=12 - - - - rs6426213 no chr1 24970138 C UTR5 - - - - C->G; hom; QUAL=80.5;DP=4 C->G; hom; QUAL=35.8;DP=2 - - - - rs61773957 no chr1 28285825 A ncRNA_intronic - - - - A->C; hom; QUAL=222;DP=16 A->C; hom; QUAL=46;DP=3 - - - - rs4908383 no chr1 29443675 T UTR3 - - - - T->C; het; QUAL=36;DP=33 T->C; het; QUAL=98;DP=23 - - - - rs502393 no chr1 3543799 A intronic - - - - A->G; hom; QUAL=122;DP=8 A->G; hom; QUAL=35.8;DP=2 - - - - no rs id no chr1 36826859 A exonic ENST00000359297.2 ENSG00000196182 STK40 - - A->C; hom; QUAL=10.4;DP=1 A->C; het; QUAL=59;DP=11 - - nonsynonymous SNV nonsynonymous SNV no rs id down chr1 39919467 A exonic ENST00000361689.2 ENSG00000127603 MACF1 - - A->G; het; QUAL=16.1;DP=5 A->G; het; QUAL=53;DP=40 - - nonsynonymous SNV nonsynonymous SNV no rs id no chr1 43419354 C intronic - - - - C->A; hom; QUAL=137;DP=10 C->A; het; QUAL=130;DP=22 - - - - rs3768043 no chr1 45266606 A exonic ENST00000372201.4 ENSG00000173846 PLK3 - - A->T; het; QUAL=85;DP=11 A->G; het; QUAL=49;DP=22 - - nonsynonymous SNV nonsynonymous SNV no rs id no chr1 53771861 C ncRNA_exonic - - - - C->T; hom; QUAL=102;DP=5 C->T; hom; QUAL=134;DP=11 - - - - rs1288491 no chr1 60338776 A UTR3 - - - - A->G; het; QUAL=175;DP=35 A->G; hom; QUAL=154;DP=10 - - - - rs11207530 no chr1 61596556 C intronic - - - - C->T; hom; QUAL=118;DP=7 C->T; het; QUAL=85;DP=15 - - - - rs17121650 no chr1 65403109 A intronic - - - - A->G; hom; QUAL=122;DP=8 A->G; hom; QUAL=63;DP=3 - - - - rs11208549 no chr1 70904800 G exonic ENST00000346806.2 ENSG00000116761 CTH - - G->T; hom; QUAL=222;DP=14 G->T; het; QUAL=153;DP=12 - - nonsynonymous SNV nonsynonymous SNV rs1021737 no chr1 7833228 A UTR5 - - - - A->G; hom; QUAL=45.8;DP=2 A->G; hom; QUAL=32.8;DP=2 - - - - rs34177663 no chr1 7904475 G UTR3 - - - - G->A; hom; QUAL=175;DP=16 G->A; hom; QUAL=10.4;DP=1 - - - - rs228678 no chr1 8418644 C exonic ENST00000476556.1 ENSG00000142599 RERE - - C->A; het; QUAL=4.77;DP=2 C->A; hom; QUAL=60;DP=3 - - nonsynonymous SNV nonsynonymous SNV rs386628264 no chr1 8418650 T exonic ENST00000377464.1 ENSG00000142599 RERE - - T->C; hom; QUAL=10.4;DP=1 T->C; hom; QUAL=68;DP=3 - - synonymous SNV synonymous SNV rs1058766 no chr1 85025945 T ncRNA_intronic - - - - T->C; hom; QUAL=222;DP=24 T->C; hom; QUAL=38.8;DP=2 - - - - rs59898877 no chr1 8871690 G intronic - - - - G->A; hom; QUAL=177;DP=20 G->A; hom; QUAL=64.5;DP=4 - - - - rs7520572 no chr1 891021 G intronic - - - - G->A; hom; QUAL=10.4;DP=1 G->A; hom; QUAL=20.8;DP=2 - - - - rs13302957 no chr1 89422472 T intronic - - - - T->G; hom; QUAL=35.8;DP=2 T->G; hom; QUAL=42.8;DP=2 - - - - rs10922528 no chr1 9162243 T UTR3 - - - - T->C; het; QUAL=85;DP=9 T->C; hom; QUAL=166;DP=13 - - - - no rs id no chr1 9231624 T ncRNA_intronic - - - - T->C; het; QUAL=92;DP=22 T->C; het; QUAL=32;DP=20 - - - - no rs id no chr1 92795104 C intronic - - - - C->T; hom; QUAL=96.3;DP=5 C->T; hom; QUAL=145;DP=6 - - - - rs79491239 no chr10 101380968 T ncRNA_exonic - - - - T->C; hom; QUAL=32.8;DP=2 T->C; hom; QUAL=35.8;DP=2 - - - - rs2297448 no chr10 102764511 G intronic - - - - G->A; hom; QUAL=41.8;DP=2 G->A; hom; QUAL=7.8;DP=1 - - - - rs386615202 no chr10 102764895 A intronic - - - - A->G; hom; QUAL=38.8;DP=2 A->G; het; QUAL=207;DP=14 - - - - no rs id no chr10 111793850 G intronic - - - - G->A; het; QUAL=4.77;DP=1 G->A; hom; QUAL=48.8;DP=2 - - - - rs7073105 no chr10 114481070 G intronic - - - - G->A; hom; QUAL=24.8;DP=2 G->A; het; QUAL=26;DP=4 - - - - rs963460 no chr10 114754714 C intronic - - - - C->A; hom; QUAL=35.8;DP=2 C->A; hom; QUAL=49;DP=3 - - - - no rs id no chr10 120924651 A intronic - - - - A->T; hom; QUAL=129;DP=8 A->T; hom; QUAL=36.8;DP=2 - - - - rs11198807 no chr10 126490947 C intronic - - - - C->T; hom; QUAL=112;DP=9 C->T; hom; QUAL=154;DP=14 - - - - rs2683598 no chr10 128601941 C intronic - - - - C->T; hom; QUAL=7.8;DP=1 C->T; hom; QUAL=32.8;DP=2 - - - - rs7076163 no chr10 14589786 A intronic - - - - A->T; hom; QUAL=99.5;DP=4 A->T; het; QUAL=4.77;DP=1 - - - - rs72768915 no chr10 27799309 G intronic - - - - G->C; het; QUAL=91;DP=8 G->C; hom; QUAL=7.8;DP=1 - - - - rs12356076 no chr10 3203498 T ncRNA_intronic - - - - T->C; hom; QUAL=159;DP=15 T->C; hom; QUAL=135;DP=9 - - - - rs7900718 no chr10 32186783 A intronic - - - - A->G; hom; QUAL=122;DP=7 A->G; hom; QUAL=38.8;DP=2 - - - - rs2491272 no chr10 33196703 T intronic - - - - T->C; hom; QUAL=121;DP=7 T->C; hom; QUAL=20.8;DP=2 - - - - rs2488319 no chr10 3816180 C intergenic - - - - C->T; hom; QUAL=96.5;DP=4 C->T; hom; QUAL=38.8;DP=2 - - - - rs10795075 no chr10 38692597 G upstream - - - - G->A; hom; QUAL=32.8;DP=2 G->A; hom; QUAL=45.8;DP=2 - - - - rs2804634 no chr10 43636800 G intronic - - - - G->A; hom; QUAL=60;DP=3 G->A; hom; QUAL=54.5;DP=4 - - - - rs192309683 no chr10 5727202 C intronic - - - - C->T; hom; QUAL=145;DP=9 C->T; hom; QUAL=54;DP=3 - - - - rs7091641 no chr10 5783167 A ncRNA_intronic - - - - A->G; hom; QUAL=7.8;DP=1 A->G; hom; QUAL=130;DP=7 - - - - rs2797487 no chr10 62478269 G intronic - - - - G->A; hom; QUAL=104;DP=6 G->A; hom; QUAL=102;DP=5 - - - - rs16915422 no chr10 70095443 G intronic - - - - G->A; hom; QUAL=222;DP=17 G->A; hom; QUAL=7.8;DP=1 - - - - rs386520369 no chr10 71561770 G UTR5 - - - - G->A; hom; QUAL=88;DP=15 G->A; hom; QUAL=139;DP=8 - - - - rs386572283 no chr10 71562437 G exonic ENST00000479733.1 ENSG00000197467 COL13A1 - - G->A; hom; QUAL=38.8;DP=2 G->A; hom; QUAL=7.8;DP=9 - - synonymous SNV synonymous SNV rs10998973 no chr10 71678058 C exonic ENST00000479733.1 ENSG00000197467 COL13A1 - - C->G; hom; QUAL=50;DP=3 C->G; hom; QUAL=156;DP=12 - - synonymous SNV synonymous SNV rs2274181 no chr10 71690584 C intronic - - - - C->A; hom; QUAL=106;DP=12 C->A; hom; QUAL=222;DP=22 - - - - rs2763340 no chr10 75276742 T exonic ENST00000394811.2 ENSG00000166348 USP54 - - T->C; hom; QUAL=7.8;DP=1 T->C; hom; QUAL=53;DP=3 - - nonsynonymous SNV nonsynonymous SNV rs141936153 no chr10 75836133 G intronic - - - - G->T; hom; QUAL=180;DP=21 G->T; hom; QUAL=129;DP=8 - - - - rs2934773 no chr10 79566632 G exonic ENST00000424842.1 ENSG00000151208 DLG5 - - G->A; hom; QUAL=66;DP=3 G->A; hom; QUAL=117;DP=10 - - nonsynonymous SNV nonsynonymous SNV rs1058198 no chr10 81961021 C intronic - - - - C->T; hom; QUAL=66;DP=3 C->T; hom; QUAL=23.8;DP=2 - - - - rs2819941 no chr10 88722398 A exonic ENST00000348795.4 ENSG00000173267 SNCG - - A->T; hom; QUAL=120;DP=6 A->T; het; QUAL=110;DP=19 - - stoploss SNV stoploss SNV rs9864 no chr10 89269267 G intronic - - - - G->A; hom; QUAL=35.8;DP=2 G->A; hom; QUAL=155;DP=10 - - - - rs3843598 no chr10 89675590 G intronic - - - - G->C; hom; QUAL=80.5;DP=4 G->C; hom; QUAL=66;DP=3 - - - - rs1234223 no chr10 94714427 C exonic ENST00000260762.6 ENSG00000138190 EXOC6 - - C->G; het; QUAL=3.54;DP=2 C->G; hom; QUAL=91.3;DP=5 - - nonsynonymous SNV nonsynonymous SNV rs11187225 no chr10 96325191 A intronic - - - - A->G; hom; QUAL=38.8;DP=2 A->G; hom; QUAL=7.8;DP=1 - - - - no rs id no chr10 97804167 A exonic ENST00000465148.2 ENSG00000107443 CCNJ - - A->T; het; QUAL=56;DP=13 A->T; het; QUAL=5.46;DP=9 - - nonsynonymous SNV nonsynonymous SNV no rs id no chr10 99504630 G exonic ENST00000356257.4 ENSG00000155256 ZFYVE27 - - G->T; hom; QUAL=41.8;DP=2 G->T; hom; QUAL=222;DP=20 - - nonsynonymous SNV nonsynonymous SNV rs10882993 no chr11 102105605 A intergenic - - - - A->G; hom; QUAL=80;DP=15 A->G; hom; QUAL=22;DP=3 - - - - rs2846837 no chr11 102105673 A intergenic - - - - A->G; hom; QUAL=156;DP=15 A->G; hom; QUAL=35.8;DP=3 - - - - rs2846836 no chr11 107716874 G intronic - - - - G->A; hom; QUAL=35.8;DP=2 G->A; hom; QUAL=60;DP=3 - - - - rs10890769 no chr11 121418806 C intronic - - - - C->T; hom; QUAL=7.8;DP=1 C->T; hom; QUAL=7.8;DP=1 - - - - rs7103597 no chr11 12191093 C intronic - - - - C->T; hom; QUAL=98.5;DP=4 C->T; hom; QUAL=7.8;DP=1 - - - - rs11022221 no chr11 12191162 C intronic - - - - C->A; hom; QUAL=35.8;DP=2 C->A; hom; QUAL=7.8;DP=1 - - - - rs10831745 no chr11 129142636 A intronic - - - - A->G; hom; QUAL=16.1;DP=21 A->G; hom; QUAL=175;DP=10 - - - - rs11221630 no chr11 129948489 T intronic - - - - T->G; hom; QUAL=144;DP=9 T->G; hom; QUAL=66;DP=3 - - - - rs58488415 no chr11 131646478 T intronic - - - - T->A; hom; QUAL=127;DP=11 T->A; hom; QUAL=45.8;DP=2 - - - - rs10894443 no chr11 17537033 A intronic - - - - A->G; hom; QUAL=45.8;DP=2 A->G; hom; QUAL=98.1;DP=6 - - - - rs7119876 no chr11 17550138 T intronic - - - - T->C; hom; QUAL=167;DP=24 T->C; hom; QUAL=141;DP=10 - - - - rs2108333 no chr11 18428166 G ncRNA_intronic - - - - G->A; hom; QUAL=7.8;DP=1 G->A; hom; QUAL=80.5;DP=4 - - - - rs10766476 no chr11 28352603 A UTR3 - - - - A->G; hom; QUAL=142;DP=8 A->G; hom; QUAL=196;DP=8 - - - - rs144938816 no chr11 2936434 G intronic - - - - G->A; hom; QUAL=118;DP=16 G->A; hom; QUAL=128;DP=8 - - - - rs450876 no chr11 3041195 G intronic - - - - G->A; hom; QUAL=101;DP=7 G->A; hom; QUAL=32.8;DP=2 - - - - rs2106229 no chr11 3067687 G intronic - - - - G->T; hom; QUAL=144;DP=10 G->T; hom; QUAL=60;DP=3 - - - - rs3782077 no chr11 3073838 A intronic - - - - A->T; hom; QUAL=41.8;DP=2 A->T; het; QUAL=4.77;DP=1 - - - - rs2290000 no chr11 3075348 G intronic - - - - G->A; hom; QUAL=7.8;DP=1 G->A; hom; QUAL=94.3;DP=5 - - - - rs6578319 no chr11 3076257 C UTR5 - - - - C->T; hom; QUAL=157;DP=16 C->T; hom; QUAL=170;DP=14 - - - - rs7945933 no chr11 33149185 T intronic - - - - T->C; hom; QUAL=38.8;DP=2 T->C; hom; QUAL=63;DP=3 - - - - rs3117652 no chr11 34929051 T intronic - - - - T->C; hom; QUAL=144;DP=6 T->C; hom; QUAL=87.5;DP=4 - - - - rs2025777 no chr11 46589518 T intronic - - - - T->C; hom; QUAL=7.8;DP=2 T->C; hom; QUAL=28.8;DP=2 - - - - no rs id no chr11 46599390 G intronic - - - - G->C; het; QUAL=4.77;DP=1 G->C; hom; QUAL=169;DP=15 - - - - rs4752802 no chr11 47259668 T intronic - - - - T->C; hom; QUAL=106;DP=7 T->C; hom; QUAL=109;DP=4 - - - - rs326222 no chr11 47331116 T exonic ENST00000402799.1 ENSG00000110514 MADD - - T->C; hom; QUAL=161;DP=7 T->C; hom; QUAL=222;DP=17 - - synonymous SNV synonymous SNV rs1017594 down chr11 47648042 G intronic - - - - G->A; hom; QUAL=66;DP=3 G->A; hom; QUAL=150;DP=9 - - - - rs4752856 no chr11 57561106 G intronic - - - - G->T; hom; QUAL=35.8;DP=2 G->T; hom; QUAL=7.8;DP=1 - - - - rs386597260 no chr11 61717607 C UTR5 - - - - C->T; het; QUAL=4.77;DP=1 C->T; het; QUAL=36;DP=10 - - - - rs972354 no chr11 61914369 C exonic ENST00000394818.3 ENSG00000149503 INCENP - - C->T; hom; QUAL=137;DP=8 C->T; het; QUAL=4.77;DP=1 - - synonymous SNV synonymous SNV rs35595038 no chr11 64572557 A exonic ENST00000315422.4 ENSG00000133895 MEN1 - - A->G; hom; QUAL=7.8;DP=1 A->G; hom; QUAL=154;DP=8 - - stoploss SNV stoploss SNV rs540012 no chr11 64977424 C intronic - - - - C->T; hom; QUAL=164;DP=17 C->T; hom; QUAL=216;DP=14 - - - - rs2271448 no chr11 65207472 A ncRNA_exonic - - - - A->G; het; QUAL=134;DP=18 A->G; hom; QUAL=7.8;DP=1 - - - - no rs id no chr11 65628334 G exonic ENST00000529857.1 ENSG00000172732 MUS81 - - G->A; hom; QUAL=79.3;DP=5 G->A; hom; QUAL=35.8;DP=2 - - nonsynonymous SNV nonsynonymous SNV rs13817 no chr11 65667149 C intronic - - - - C->G; hom; QUAL=119;DP=7 C->G; hom; QUAL=146;DP=11 - - - - rs10160792 no chr11 65683513 A downstream - - - - A->G; hom; QUAL=129;DP=11 A->G; hom; QUAL=96.5;DP=4 - - - - rs9326359 no chr11 65683531 A downstream - - - - A->G; hom; QUAL=222;DP=17 A->G; hom; QUAL=142;DP=6 - - - - rs677029 no chr11 66138894 G intronic - - - - G->C; hom; QUAL=131;DP=10 G->C; hom; QUAL=179;DP=9 - - - - rs7946434 no chr11 67370922 A UTR3 - - - - A->C; hom; QUAL=38.8;DP=2 A->C; hom; QUAL=7.8;DP=1 - - - - no rs id no chr11 67371007 C UTR3 - - - - C->T; hom; QUAL=32.8;DP=2 C->T; hom; QUAL=7.8;DP=1 - - - - no rs id no chr11 67371425 A UTR3 - - - - A->C; hom; QUAL=31;DP=41 A->C; het; QUAL=225;DP=34 - - - - no rs id no chr11 67371498 C UTR3 - - - - C->T; hom; QUAL=36;DP=41 C->T; hom; QUAL=179;DP=19 - - - - no rs id no chr11 68118563 T intronic - - - - T->C; hom; QUAL=10.4;DP=1 T->C; hom; QUAL=34.8;DP=2 - - - - rs312783 no chr11 714980 T ncRNA_intronic - - - - T->C; hom; QUAL=66;DP=3 T->C; hom; QUAL=59;DP=3 - - - - rs12361811 no chr11 86644746 G intronic - - - - G->C; hom; QUAL=159;DP=16 G->C; hom; QUAL=10.4;DP=1 - - - - rs3740666 no chr11 881651 A intronic - - - - A->G; hom; QUAL=136;DP=9 A->G; hom; QUAL=121;DP=7 - - - - rs7125283 no chr11 881656 T intronic - - - - T->G; hom; QUAL=136;DP=9 T->G; hom; QUAL=126;DP=7 - - - - rs7121430 no chr11 93468094 T intronic - - - - T->C; het; QUAL=135;DP=41 T->C; hom; QUAL=7.8;DP=1 - - - - rs1063080 no chr12 104325725 A intronic - - - - A->G; hom; QUAL=152;DP=11 A->G; hom; QUAL=119;DP=6 - - - - rs10778306 no chr12 104326991 A intronic - - - - A->G; hom; QUAL=10.4;DP=1 A->G; hom; QUAL=7.8;DP=1 - - - - rs1920413 no chr12 104512918 T UTR3 - - - - T->G; hom; QUAL=222;DP=14 T->G; het; QUAL=29;DP=3 - - - - rs2466551 no chr12 104735120 G intronic - - - - G->A; hom; QUAL=222;DP=34 G->A; hom; QUAL=169;DP=9 - - - - rs76462012 no chr12 1056822 A intronic - - - - A->G; hom; QUAL=7.8;DP=1 A->G; hom; QUAL=27.8;DP=2 - - - - rs10744730 no chr12 106741767 C downstream - - - - C->T; hom; QUAL=10.4;DP=1 C->T; hom; QUAL=168;DP=36 - - - - rs10861579 no chr12 107354037 T intronic - - - - T->C; hom; QUAL=222;DP=20 T->C; hom; QUAL=27.8;DP=2 - - - - rs2374652 no chr12 107367224 T UTR3 - - - - T->C; hom; QUAL=41.8;DP=2 T->C; hom; QUAL=207;DP=11 - - - - rs367981842 no chr12 107367225 T UTR3 - - - - T->C; hom; QUAL=41.8;DP=2 T->C; hom; QUAL=203;DP=10 - - - - rs1053051 no chr12 120491235 T intronic - - - - T->C; hom; QUAL=37;DP=9 T->C; hom; QUAL=10.4;DP=1 - - - - rs78555544 no chr12 123342229 A intronic - - - - A->G; hom; QUAL=136;DP=8 A->G; hom; QUAL=131;DP=7 - - - - rs1587856 no chr12 124887096 T exonic ENST00000405201.1 ENSG00000196498 NCOR2 - - T->C; het; QUAL=102;DP=16 T->C; hom; QUAL=10.4;DP=1 - - nonsynonymous SNV nonsynonymous SNV rs28690647 no chr12 124913449 C intronic - - - - C->G; hom; QUAL=41.8;DP=2 C->G; hom; QUAL=57;DP=3 - - - - rs1244094 no chr12 125398517 G UTR5 - - - - G->A; hom; QUAL=42.8;DP=2 G->A; hom; QUAL=222;DP=15 - - - - rs2070628 no chr12 127650639 A ncRNA_exonic - - - - A->G; het; QUAL=47;DP=206 A->G; het; QUAL=9.52;DP=11 - - - - rs61936129 no chr12 13067528 T UTR3 - - - - T->C; het; QUAL=83;DP=24 T->C; het; QUAL=14.2;DP=18 - - - - rs10845669 no chr12 13069412 T UTR3 - - - - T->C; het; QUAL=226;DP=48 T->C; het; QUAL=95;DP=78 - - - - rs140098634 no chr12 133339417 T upstream - - - - T->C; hom; QUAL=10.4;DP=1 T->C; hom; QUAL=87.5;DP=4 - - - - rs11147064 no chr12 14922909 C intronic - - - - C->A; het; QUAL=125;DP=11 C->A; het; QUAL=25;DP=5 - - - - rs16910241 no chr12 27161525 T intronic - - - - T->C; hom; QUAL=119;DP=6 T->C; hom; QUAL=87.5;DP=4 - - - - rs7299556 no chr12 3049631 C UTR3 - - - - C->T; hom; QUAL=159;DP=19 C->T; hom; QUAL=152;DP=11 - - - - rs2302282 no chr12 32563932 T intronic - - - - T->C; hom; QUAL=150;DP=10 T->C; hom; QUAL=23.8;DP=2 - - - - rs11051991 no chr12 48458987 T exonic ENST00000448372.1 ENSG00000079387 SENP1 - - T->C; hom; QUAL=130;DP=13 T->C; hom; QUAL=67.5;DP=4 - - nonsynonymous SNV nonsynonymous SNV no rs id no chr12 50452708 C exonic ENST00000228468.4 ENSG00000110881 ASIC1 - - C->G; hom; QUAL=27.8;DP=2 C->G; hom; QUAL=99.3;DP=5 - - synonymous SNV synonymous SNV rs653576 no chr12 50538835 T exonic ENST00000550899.1 ENSG00000139624 CERS5 - - T->C; hom; QUAL=45.8;DP=2 T->C; het; QUAL=85;DP=9 - - synonymous SNV synonymous SNV no rs id no chr12 51515116 T intronic - - - - T->C; hom; QUAL=87.5;DP=4 T->C; hom; QUAL=35.8;DP=2 - - - - no rs id no chr12 51515126 T intronic - - - - T->C; hom; QUAL=87.5;DP=4 T->C; hom; QUAL=35.8;DP=2 - - - - no rs id no chr12 53297594 C intronic - - - - C->G; hom; QUAL=146;DP=9 C->G; hom; QUAL=60;DP=3 - - - - rs4919703 no chr12 62916144 G intronic - - - - G->T; hom; QUAL=41.8;DP=2 G->T; hom; QUAL=32.8;DP=2 - - - - rs4763023 no chr12 9449147 G ncRNA_intronic - - - - G->A; hom; QUAL=142;DP=10 G->A; hom; QUAL=102;DP=5 - - - - rs201015886 no chr12 9449306 C ncRNA_intronic - - - - C->A; hom; QUAL=165;DP=20 C->A; hom; QUAL=105;DP=9 - - - - rs200293858 no chr12 97346924 G UTR3 - - - - G->A; hom; QUAL=180;DP=21 G->A; hom; QUAL=35.8;DP=2 - - - - rs1044910 no chr13 108871489 G intronic - - - - G->T; hom; QUAL=96.3;DP=5 G->T; hom; QUAL=35.8;DP=2 - - - - rs12428136 no chr13 110850842 A exonic ENST00000543140.1 ENSG00000187498 COL4A1 - - A->G; hom; QUAL=11.1;DP=2 A->G; hom; QUAL=222;DP=29 - - synonymous SNV synonymous SNV rs995224 no chr13 113373431 T intronic - - - - T->C; hom; QUAL=222;DP=19 T->C; hom; QUAL=158;DP=11 - - - - rs282566 no chr13 113439586 G intronic - - - - G->T; hom; QUAL=60;DP=3 G->T; het; QUAL=103;DP=9 - - - - rs11616475 no chr13 113509919 A intronic - - - - A->G; hom; QUAL=38.8;DP=2 A->G; hom; QUAL=107;DP=5 - - - - rs3742230 no chr13 113528499 A intronic - - - - A->C; hom; QUAL=174;DP=17 A->C; hom; QUAL=89.5;DP=4 - - - - rs386774994 no chr13 113528501 C intronic - - - - C->G; hom; QUAL=175;DP=17 C->G; hom; QUAL=89.5;DP=4 - - - - rs9549594 no chr13 113673400 C intronic - - - - C->T; hom; QUAL=143;DP=8 C->T; hom; QUAL=136;DP=6 - - - - rs3011522 no chr13 113911651 C intronic - - - - C->T; hom; QUAL=163;DP=22 C->T; hom; QUAL=94.3;DP=5 - - - - rs12876365 no chr13 20657286 T intronic - - - - T->G; hom; QUAL=222;DP=40 T->G; hom; QUAL=113;DP=7 - - - - rs9509029 no chr13 20657312 C intronic - - - - C->G; hom; QUAL=222;DP=40 C->G; hom; QUAL=214;DP=14 - - - - rs9509030 no chr13 20763642 C exonic ENST00000382844.1 ENSG00000165474 GJB2 - - C->T; hom; QUAL=92.3;DP=5 C->T; hom; QUAL=7.8;DP=2 - - nonsynonymous SNV nonsynonymous SNV rs2274084 no chr13 21465920 T intronic - - - - T->G; hom; QUAL=147;DP=11 T->G; hom; QUAL=35.8;DP=2 - - - - rs9509421 no chr13 21948577 T intergenic - - - - T->C; het; QUAL=3.54;DP=3 T->C; het; QUAL=102;DP=29 - - - - no rs id no chr13 28003362 C intronic - - - - C->G; hom; QUAL=94.5;DP=4 C->G; het; QUAL=4.77;DP=1 - - - - rs1237710 no chr13 28241061 T UTR3 - - - - T->C; hom; QUAL=38.8;DP=2 T->C; hom; QUAL=63;DP=3 - - - - rs11149483 no chr13 31711857 T intronic - - - - T->G; hom; QUAL=70.5;DP=4 T->G; hom; QUAL=134;DP=8 - - - - rs4941761 no chr13 37551898 T intronic - - - - T->C; hom; QUAL=161;DP=11 T->C; hom; QUAL=128;DP=7 - - - - no rs id no chr13 39621275 A exonic ENST00000379600.3 ENSG00000188811 NHLRC3 - - A->C; hom; QUAL=94.1;DP=6 A->G; het; QUAL=41;DP=4 - - synonymous SNV synonymous SNV no rs id no chr13 41384489 A upstream; downstream - - - - A->G; hom; QUAL=69;DP=3 A->G; hom; QUAL=41.8;DP=2 - - - - no rs id no chr13 42809276 G intergenic - - - - G->C; hom; QUAL=152;DP=6 G->C; het; QUAL=75;DP=11 - - - - rs1449505 no chr13 46096012 A intronic - - - - A->G; hom; QUAL=160;DP=12 A->G; hom; QUAL=45.8;DP=2 - - - - no rs id no chr13 49735653 A intronic - - - - A->G; hom; QUAL=122;DP=6 A->G; het; QUAL=4.77;DP=1 - - - - rs78001263 no chr13 52515354 A exonic ENST00000418097.2 ENSG00000123191 ATP7B - - A->G; hom; QUAL=146;DP=14 A->G; het; QUAL=51;DP=13 - - stoploss SNV stoploss SNV rs1801249 no chr13 73653881 T intergenic - - - - T->C; hom; QUAL=222;DP=44 T->C; hom; QUAL=87.5;DP=4 - - - - rs4883922 no chr13 76410725 A intronic - - - - A->G; hom; QUAL=94.5;DP=4 A->G; hom; QUAL=116;DP=7 - - - - rs2273996 no chr13 92015525 G intergenic - - - - G->A; hom; QUAL=45.8;DP=2 G->A; het; QUAL=4.77;DP=1 - - - - rs17667900 no chr13 98002508 G intronic - - - - G->A; het; QUAL=225;DP=41 G->A; hom; QUAL=222;DP=16 - - - - rs7318250 no chr13 98002623 G intronic - - - - G->C; hom; QUAL=175;DP=17 G->C; hom; QUAL=92.3;DP=5 - - - - rs9584559 no chr13 98007015 A intronic - - - - A->G; hom; QUAL=222;DP=19 A->G; hom; QUAL=38.8;DP=2 - - - - rs6491350 no chr13 99207711 T intronic - - - - T->C; hom; QUAL=162;DP=18 T->C; hom; QUAL=85.5;DP=4 - - - - no rs id no chr14 103073525 C intronic - - - - C->G; hom; QUAL=99.5;DP=4 C->G; hom; QUAL=35.8;DP=2 - - - - rs2403067 no chr14 103073533 G intronic - - - - G->A; hom; QUAL=103;DP=4 G->A; hom; QUAL=28.8;DP=2 - - - - rs2403068 no chr14 103804720 A exonic ENST00000558265.1 ENSG00000100664 EIF5 - - A->G; hom; QUAL=28.8;DP=2 A->G; het; QUAL=48;DP=22 - - nonsynonymous SNV nonsynonymous SNV no rs id up chr14 23303293 T intronic - - - - T->G; hom; QUAL=68;DP=3 T->G; hom; QUAL=10.4;DP=1 - - - - rs12437230 no chr14 31795548 T exonic ENST00000439348.1 ENSG00000129493 HEATR5A - - T->C; het; QUAL=49;DP=5 T->C; het; QUAL=100;DP=14 - - stopgain SNV stopgain SNV no rs id no chr14 31855629 T exonic ENST00000439348.1 ENSG00000129493 HEATR5A - - T->A; hom; QUAL=7.8;DP=1 T->A; hom; QUAL=45.8;DP=2 - - stopgain SNV stopgain SNV no rs id no chr14 35496029 A intronic - - - - A->G; hom; QUAL=222;DP=23 A->G; hom; QUAL=123;DP=9 - - - - no rs id no chr14 35683426 A intronic - - - - A->G; hom; QUAL=30.8;DP=2 A->G; hom; QUAL=91;DP=8 - - - - rs12589317 no chr14 39844119 A intronic - - - - A->G; hom; QUAL=159;DP=11 A->G; hom; QUAL=222;DP=14 - - - - rs8014839 no chr14 53130507 T exonic ENST00000554019.1 ENSG00000197930 ERO1L - - T->C; hom; QUAL=7.8;DP=1 T->C; hom; QUAL=45.8;DP=2 - - nonsynonymous SNV nonsynonymous SNV rs17125636 no chr14 54552557 G intergenic - - - - G->A; hom; QUAL=162;DP=11 G->A; het; QUAL=89;DP=8 - - - - rs1957641 no chr14 54630278 A intergenic - - - - A->G; hom; QUAL=181;DP=24 A->G; het; QUAL=30;DP=20 - - - - rs2358478 no chr14 54661615 T intergenic - - - - T->C; hom; QUAL=20.8;DP=2 T->C; hom; QUAL=81.5;DP=4 - - - - rs8011813 no chr14 54681823 T intergenic - - - - T->C; hom; QUAL=7.8;DP=1 T->C; het; QUAL=29;DP=3 - - - - no rs id no chr14 74428445 G exonic ENST00000238709.4 ENSG00000119723 COQ6 - - G->A; hom; QUAL=85.5;DP=4 G->A; het; QUAL=3.02;DP=1 - - nonsynonymous SNV nonsynonymous SNV rs8500 no chr14 77930752 G intronic - - - - G->A; hom; QUAL=10.4;DP=1 G->A; hom; QUAL=41.8;DP=2 - - - - rs11624314 no chr14 92582528 A UTR3 - - - - A->G; het; QUAL=97;DP=10 A->C; het; QUAL=98;DP=41 - - - - no rs id no chr14 99991077 G intronic - - - - G->A; hom; QUAL=118;DP=7 G->A; hom; QUAL=10.4;DP=1 - - - - rs4905844 no chr15 102192540 T exonic ENST00000560013.1 ENSG00000184277 TM2D3 - - T->G; hom; QUAL=141;DP=8 T->G; hom; QUAL=41;DP=3 - - nonsynonymous SNV nonsynonymous SNV rs675436 no chr15 40300214 G intronic - - - - G->C; hom; QUAL=173;DP=17 G->C; hom; QUAL=139;DP=9 - - - - rs2279580 no chr15 40855210 T exonic ENST00000558871.1 ENSG00000128891 C15orf57 - - T->A; het; QUAL=25;DP=14 T->A; hom; QUAL=172;DP=19 - - nonsynonymous SNV nonsynonymous SNV rs10152546 no chr15 40898643 G exonic ENST00000527044.1 ENSG00000137812 CASC5 - - G->C; hom; QUAL=184;DP=29 G->C; het; QUAL=31;DP=4 - - nonsynonymous SNV nonsynonymous SNV rs7177192 no chr15 41245329 T UTR5 - - - - T->C; hom; QUAL=10.4;DP=1 T->C; hom; QUAL=222;DP=14 - - - - rs11070311 no chr15 41247383 G intronic - - - - G->A; hom; QUAL=97.5;DP=4 G->A; hom; QUAL=160;DP=15 - - - - rs2412576 no chr15 41869545 T intronic - - - - T->C; hom; QUAL=35.8;DP=2 T->C; hom; QUAL=167;DP=8 - - - - rs1200342 no chr15 42118971 A ncRNA_UTR3 - - - - A->G; hom; QUAL=162;DP=12 A->G; hom; QUAL=10.4;DP=1 - - - - rs3743024 no chr15 43212818 C UTR5 - - - - C->G; hom; QUAL=102;DP=6 C->G; hom; QUAL=38;DP=3 - - - - rs12437637 no chr15 44943757 A exonic ENST00000557866.1 ENSG00000104133 SPG11 - - A->G; het; QUAL=32;DP=4 A->G; hom; QUAL=104;DP=5 - - nonsynonymous SNV nonsynonymous SNV rs3759871 no chr15 52202307 G UTR3 - - - - G->A; het; QUAL=26;DP=4 G->A; het; QUAL=61;DP=18 - - - - rs74408321 no chr15 56121886 C UTR3 - - - - C->A; hom; QUAL=10.4;DP=1 C->A; het; QUAL=103;DP=16 - - - - rs1042477 no chr15 59914314 T intergenic - - - - T->C; het; QUAL=4.77;DP=1 T->C; hom; QUAL=143;DP=8 - - - - rs7173057 no chr15 67483979 G UTR3 - - - - G->A; hom; QUAL=41.8;DP=2 G->A; hom; QUAL=222;DP=20 - - - - rs8031440 no chr15 69747829 T exonic ENST00000357790.5 ENSG00000137818 RPLP1 - - T->G; het; QUAL=9.52;DP=16 T->G; het; QUAL=68;DP=46 - - nonsynonymous SNV nonsynonymous SNV no rs id no chr15 85081832 A ncRNA_exonic - - - - A->G; hom; QUAL=45.8;DP=2 A->G; hom; QUAL=139;DP=8 - - - - rs150964 no chr15 89172352 C intronic - - - - C->T; hom; QUAL=60;DP=3 C->T; hom; QUAL=7.8;DP=1 - - - - rs3826040 no chr15 89744476 G ncRNA_exonic - - - - G->T; hom; QUAL=60;DP=3 G->T; hom; QUAL=134;DP=8 - - - - rs6416547 no chr15 91446316 A UTR5 - - - - A->T; hom; QUAL=174;DP=9 A->T; hom; QUAL=61.5;DP=4 - - - - rs28446644 no chr15 91448626 C exonic ENST00000559999.1 ENSG00000196547 MAN2A2 - - C->T; hom; QUAL=66;DP=3 C->T; het; QUAL=69;DP=7 - - nonsynonymous SNV nonsynonymous SNV rs28446956 no chr15 93447747 G UTR5 - - - - G->C; hom; QUAL=222;DP=17 G->C; hom; QUAL=110;DP=6 - - - - rs111735136 no chr16 11154770 G exonic ENST00000409790.1 ENSG00000038532 CLEC16A - - G->A; hom; QUAL=151;DP=9 G->A; het; QUAL=92;DP=13 - - synonymous SNV synonymous SNV rs2286973 no chr16 1367030 T intronic - - - - T->G; hom; QUAL=103;DP=7 T->G; het; QUAL=4.77;DP=1 - - - - no rs id no chr16 15202839 G ncRNA_exonic - - - - G->T; hom; QUAL=140;DP=13 G->C; hom; QUAL=68.5;DP=6 - - - - rs201218008 no chr16 2011126 A intronic - - - - A->G; hom; QUAL=153;DP=11 A->G; hom; QUAL=74.5;DP=4 - - - - rs758335 no chr16 2331430 A exonic ENST00000382381.3 ENSG00000167972 ABCA3 - - A->G; hom; QUAL=158;DP=16 A->G; hom; QUAL=10.4;DP=1 - - synonymous SNV synonymous SNV rs149532 no chr16 2910767 A intergenic - - - - A->G; hom; QUAL=121;DP=8 A->G; hom; QUAL=94.3;DP=5 - - - - rs4785912 no chr16 29417386 G ncRNA_exonic - - - - G->A; het; QUAL=151;DP=17 G->A; het; QUAL=32;DP=6 - - - - no rs id no chr16 29524549 T intergenic - - - - T->C; hom; QUAL=54;DP=3 T->C; hom; QUAL=9.31;DP=2 - - - - no rs id no chr16 2987279 G exonic ENST00000344592.5 ENSG00000059122 FLYWCH1 - - G->T; hom; QUAL=128;DP=8 G->T; het; QUAL=44;DP=6 - - nonsynonymous SNV nonsynonymous SNV rs61747750 no chr16 29910518 C UTR5 - - - - C->G; het; QUAL=4.77;DP=1 C->G; hom; QUAL=27.8;DP=2 - - - - rs11344 no chr16 30936743 G intronic - - - - G->A; hom; QUAL=163;DP=12 G->A; hom; QUAL=195;DP=10 - - - - rs72799341 no chr16 31099859 G intronic - - - - G->A; hom; QUAL=54;DP=3 G->A; hom; QUAL=7.8;DP=1 - - - - rs73530203 no chr16 31133055 T intronic - - - - T->A; hom; QUAL=132;DP=9 T->A; hom; QUAL=10.4;DP=1 - - - - rs11639833 no chr16 4517820 T intronic - - - - T->C; het; QUAL=3.54;DP=4 T->C; hom; QUAL=30.8;DP=2 - - - - no rs id no chr16 57698501 G UTR3 - - - - G->A; het; QUAL=126;DP=33 G->A; het; QUAL=59;DP=29 - - - - rs1043540 no chr16 58577788 T exonic ENST00000569240.1 ENSG00000125107 CNOT1 - - T->C; het; QUAL=35;DP=21 T->C; het; QUAL=78;DP=25 - - nonsynonymous SNV nonsynonymous SNV no rs id no chr16 58591987 G intronic - - - - G->A; hom; QUAL=55;DP=4 G->A; hom; QUAL=45.8;DP=2 - - - - rs8047769 no chr16 58657340 A intronic - - - - A->G; hom; QUAL=114;DP=6 A->G; hom; QUAL=83.5;DP=5 - - - - rs181951 no chr16 69619388 T intronic - - - - T->G; hom; QUAL=41.8;DP=2 T->G; hom; QUAL=7.8;DP=1 - - - - rs168637 no chr16 69736628 C UTR3 - - - - C->T; het; QUAL=131;DP=12 C->T; hom; QUAL=10.4;DP=1 - - - - rs118037199 no chr16 70011414 T ncRNA_exonic - - - - T->C; het; QUAL=53;DP=18 T->C; het; QUAL=32;DP=20 - - - - no rs id no chr16 769538 G UTR3 - - - - G->A; het; QUAL=4.77;DP=1 G->A; het; QUAL=4.77;DP=1 - - - - rs2003832 no chr16 83987606 G intronic - - - - G->C; hom; QUAL=172;DP=15 G->C; hom; QUAL=71.5;DP=4 - - - - rs2550437 no chr16 83990466 C intronic - - - - C->G; hom; QUAL=161;DP=14 C->G; hom; QUAL=7.8;DP=1 - - - - rs2665303 no chr16 84806837 A intronic - - - - A->C; hom; QUAL=10.4;DP=1 A->C; hom; QUAL=222;DP=36 - - - - rs3893782 no chr16 87388956 A intronic - - - - A->C; hom; QUAL=222;DP=22 A->C; hom; QUAL=104;DP=5 - - - - rs4240793 no chr16 87788864 G exonic ENST00000353170.5 ENSG00000104731 KLHDC4 - - G->A; hom; QUAL=154;DP=10 G->A; hom; QUAL=163;DP=14 - - nonsynonymous SNV nonsynonymous SNV rs2303771 no chr16 87869313 T intronic - - - - T->C; hom; QUAL=80.1;DP=7 T->C; hom; QUAL=33;DP=3 - - - - rs55777228 no chr16 87879486 G intronic - - - - G->A; hom; QUAL=90.5;DP=4 G->A; hom; QUAL=35.8;DP=2 - - - - rs67288628 no chr16 87879522 G intronic - - - - G->T; hom; QUAL=108;DP=4 G->T; hom; QUAL=93.5;DP=4 - - - - rs997761 no chr16 87879562 C intronic - - - - C->A; hom; QUAL=27.8;DP=2 C->A; hom; QUAL=35.8;DP=2 - - - - rs997762 no chr16 87883721 A intronic - - - - A->C; hom; QUAL=122;DP=6 A->C; hom; QUAL=149;DP=11 - - - - rs6540092 no chr16 88880323 C UTR3 - - - - C->G; het; QUAL=84;DP=6 C->G; hom; QUAL=10.4;DP=1 - - - - rs3759946 no chr16 8904214 T intronic - - - - T->A; hom; QUAL=222;DP=24 T->A; hom; QUAL=129;DP=7 - - - - rs386788721 no chr16 8904215 A intronic - - - - A->G; hom; QUAL=222;DP=24 A->G; hom; QUAL=131;DP=7 - - - - rs4985040 no chr16 89474393 G ncRNA_intronic - - - - G->A; hom; QUAL=222;DP=20 G->A; het; QUAL=112;DP=15 - - - - rs747486 no chr16 89615838 A intronic - - - - A->G; hom; QUAL=89.5;DP=4 A->G; het; QUAL=4.77;DP=1 - - - - no rs id no chr16 89755903 A intronic - - - - A->G; hom; QUAL=71.5;DP=4 A->G; hom; QUAL=68;DP=3 - - - - rs386569965 no chr16 90029417 G intronic - - - - G->A; hom; QUAL=141;DP=11 G->A; hom; QUAL=38.8;DP=2 - - - - rs4785751 no chr17 1368511 A UTR3 - - - - A->G; het; QUAL=89;DP=26 A->G; het; QUAL=123;DP=18 - - - - no rs id no chr17 15442693 A intronic - - - - A->G; hom; QUAL=35.8;DP=2 A->G; hom; QUAL=80.5;DP=4 - - - - rs2938157 no chr17 15464843 A intronic - - - - A->G; hom; QUAL=134;DP=18 A->G; hom; QUAL=116;DP=6 - - - - rs483702 no chr17 15616484 T intronic - - - - T->C; hom; QUAL=154;DP=11 T->C; hom; QUAL=106;DP=6 - - - - rs9910002 no chr17 16347325 T exonic ENST00000470794.1 ENSG00000181350 FAM211A - - T->C; hom; QUAL=173;DP=8 T->C; het; QUAL=95.1;DP=7 - - nonsynonymous SNV nonsynonymous SNV rs61745139 no chr17 17165418 A exonic ENST00000583160.1 ENSG00000141030 COPS3 - - A->C; het; QUAL=4.77;DP=1 A->C; het; QUAL=54;DP=20 - - nonsynonymous SNV nonsynonymous SNV no rs id no chr17 17733601 T intronic - - - - T->C; het; QUAL=3.54;DP=3 T->C; hom; QUAL=163;DP=14 - - - - no rs id no chr17 17874486 C intronic - - - - C->T; hom; QUAL=98.5;DP=4 C->T; hom; QUAL=104;DP=5 - - - - rs8068175 no chr17 18167505 T exonic ENST00000395706.2 ENSG00000177427 MIEF2 - - T->C; hom; QUAL=94.3;DP=5 T->C; het; QUAL=110;DP=10 - - synonymous SNV synonymous SNV rs2605143 no chr17 18210810 T UTR3 - - - - T->G; hom; QUAL=174;DP=19 T->G; hom; QUAL=60;DP=3 - - - - rs4925166 no chr17 18965544 C ncRNA_exonic - - - - C->T; het; QUAL=127;DP=13 C->T; het; QUAL=110;DP=119 - - - - no rs id no chr17 2310130 G ncRNA_exonic - - - - G->A; hom; QUAL=60;DP=3 G->A; hom; QUAL=104;DP=5 - - - - rs3826335 no chr17 27065211 T exonic ENST00000543014.1 ENSG00000160602 NEK8 - - T->C; hom; QUAL=122;DP=12 T->C; het; QUAL=188;DP=36 - - nonsynonymous SNV nonsynonymous SNV rs3809797 no chr17 27157362 T intronic - - - - T->C; hom; QUAL=79.3;DP=5 T->C; hom; QUAL=77.5;DP=4 - - - - rs12946132 no chr17 27493935 G exonic ENST00000527372.1 ENSG00000196535 MYO18A - - G->A; het; QUAL=123;DP=12 G->A; het; QUAL=225;DP=43 - - nonsynonymous SNV nonsynonymous SNV rs35771220 no chr17 28712047 G exonic ENST00000225719.4 ENSG00000108582 CPD - - G->T; het; QUAL=119;DP=46 G->T; het; QUAL=214;DP=21 - - nonsynonymous SNV nonsynonymous SNV no rs id no chr17 29183492 A ncRNA_intronic - - - - A->G; hom; QUAL=162;DP=11 A->G; hom; QUAL=10.4;DP=1 - - - - no rs id no chr17 29432775 T intronic - - - - T->G; hom; QUAL=10.4;DP=1 T->G; hom; QUAL=112;DP=6 - - - - rs2001287 no chr17 29512875 C intronic - - - - C->A; hom; QUAL=166;DP=14 C->A; hom; QUAL=10.4;DP=1 - - - - rs2952977 no chr17 33330150 A UTR3 - - - - A->C; hom; QUAL=63;DP=3 A->C; hom; QUAL=136;DP=8 - - - - rs4796030 no chr17 33464864 C exonic ENST00000442241.4 ENSG00000073536 NLE1 - - C->T; hom; QUAL=173;DP=15 C->T; het; QUAL=26;DP=4 - - synonymous SNV synonymous SNV rs7215209 no chr17 3527281 C intronic - - - - C->T; hom; QUAL=80.5;DP=4 C->T; hom; QUAL=134;DP=10 - - - - rs222785 no chr17 35972254 C ncRNA_UTR3 - - - - C->T; hom; QUAL=80.5;DP=4 C->T; hom; QUAL=102;DP=5 - - - - rs57962176 no chr17 36920438 A UTR3 - - - - A->G; het; QUAL=88;DP=20 A->G; hom; QUAL=28.8;DP=2 - - - - no rs id no chr17 36940074 A intronic - - - - A->G; hom; QUAL=181;DP=23 A->G; hom; QUAL=92.3;DP=5 - - - - rs201710190 no chr17 38256693 G UTR5 - - - - G->A; het; QUAL=104;DP=21 G->A; het; QUAL=225;DP=27 - - - - rs939347 no chr17 40008056 C upstream - - - - C->A; hom; QUAL=38.8;DP=2 C->A; het; QUAL=66;DP=4 - - - - rs7216097 no chr17 41437552 T intergenic - - - - T->C; hom; QUAL=6.17;DP=3 T->C; hom; QUAL=82;DP=8 - - - - rs4792989 no chr17 41438562 T intergenic - - - - T->C; hom; QUAL=127;DP=13 T->C; het; QUAL=18.1;DP=50 - - - - rs72831089 no chr17 41623670 C ncRNA_UTR5 - - - - C->T; hom; QUAL=35.8;DP=2 C->T; hom; QUAL=28.8;DP=2 - - - - rs3765174 no chr17 42110506 T intergenic - - - - T->C; het; QUAL=26;DP=4 T->C; hom; QUAL=7.8;DP=1 - - - - rs373720374 no chr17 45176547 T ncRNA_intronic - - - - T->C; hom; QUAL=7.8;DP=1 T->C; hom; QUAL=32.8;DP=2 - - - - no rs id no chr17 45732605 G intronic - - - - G->A; hom; QUAL=160;DP=17 G->A; hom; QUAL=143;DP=10 - - - - rs11870935 no chr17 4607889 A ncRNA_intronic - - - - A->C; hom; QUAL=156;DP=10 A->C; hom; QUAL=7.8;DP=1 - - - - rs3942769 no chr17 46126894 A intronic - - - - A->G; hom; QUAL=134;DP=7 A->G; hom; QUAL=161;DP=12 - - - - rs8080228 no chr17 46699669 A UTR3 - - - - A->T; hom; QUAL=173;DP=18 A->T; het; QUAL=137;DP=19 - - - - rs2303486 no chr17 46702643 G intronic - - - - G->A; hom; QUAL=35.8;DP=2 G->A; hom; QUAL=9.31;DP=3 - - - - rs2875820 no chr17 48713180 A UTR3 - - - - A->G; het; QUAL=4.77;DP=1 A->G; het; QUAL=19.1;DP=6 - - - - rs9303560 no chr17 48725515 G intronic - - - - G->A; hom; QUAL=167;DP=12 G->A; hom; QUAL=41.8;DP=2 - - - - rs373768373 no chr17 48726050 A intronic - - - - A->G; hom; QUAL=132;DP=9 A->G; hom; QUAL=132;DP=9 - - - - no rs id no chr17 48748386 A intronic - - - - A->G; hom; QUAL=178;DP=17 A->G; hom; QUAL=6.02;DP=2 - - - - no rs id no chr17 5287946 C UTR3 - - - - C->G; hom; QUAL=133;DP=9 C->G; hom; QUAL=142;DP=8 - - - - rs11558 no chr17 56050724 T UTR3 - - - - T->G; hom; QUAL=168;DP=14 T->G; het; QUAL=90;DP=9 - - - - no rs id no chr17 57917509 T UTR3 - - - - T->A; het; QUAL=135;DP=64 T->A; het; QUAL=225;DP=55 - - - - no rs id no chr17 59431190 C intronic - - - - C->G; hom; QUAL=35.8;DP=2 C->G; hom; QUAL=116;DP=7 - - - - rs61515613 no chr17 59490235 C UTR3 - - - - C->T; hom; QUAL=108;DP=7 C->T; het; QUAL=4.77;DP=1 - - - - rs11871637 no chr17 59856810 G intronic - - - - G->A; hom; QUAL=7.8;DP=1 G->A; hom; QUAL=95.1;DP=6 - - - - rs7219791 no chr17 59856842 A intronic - - - - A->G; hom; QUAL=7.8;DP=1 A->G; hom; QUAL=108;DP=6 - - - - rs28571892 no chr17 62476429 G exonic ENST00000539111.2 ENSG00000256525 POLG2 - - G->A; hom; QUAL=7.8;DP=1 G->A; hom; QUAL=161;DP=12 - - synonymous SNV synonymous SNV rs147499130 no chr17 62526788 A intronic - - - - A->G; het; QUAL=122;DP=31 A->G; hom; QUAL=60;DP=3 - - - - no rs id no chr17 65714359 G intronic - - - - G->A; hom; QUAL=10.4;DP=1 G->A; hom; QUAL=50;DP=3 - - - - rs3760226 no chr17 66510136 C intronic - - - - C->T; hom; QUAL=41.8;DP=2 C->T; hom; QUAL=10.4;DP=1 - - - - rs4561532 no chr17 70479684 C ncRNA_intronic - - - - C->A; hom; QUAL=38.8;DP=2 C->A; hom; QUAL=10.4;DP=1 - - - - rs2041631 no chr17 73625430 G exonic ENST00000423245.2 ENSG00000108469 RECQL5 - - G->A; hom; QUAL=154;DP=14 G->A; hom; QUAL=131;DP=9 - - nonsynonymous SNV nonsynonymous SNV rs4788902 down chr17 7393865 G intronic - - - - G->A; hom; QUAL=60;DP=3 G->A; hom; QUAL=77.5;DP=4 - - - - rs8080807 no chr17 74037715 A intronic - - - - A->G; het; QUAL=4.77;DP=1 A->G; hom; QUAL=161;DP=11 - - - - rs2598446 no chr17 74037772 T intronic - - - - T->C; het; QUAL=4.77;DP=2 T->C; hom; QUAL=145;DP=11 - - - - rs2598447 no chr17 7407582 A intronic - - - - A->G; hom; QUAL=28.8;DP=2 A->G; hom; QUAL=32.8;DP=2 - - - - rs7215247 no chr17 77752395 G intronic - - - - G->A; hom; QUAL=23.8;DP=2 G->A; hom; QUAL=10.4;DP=1 - - - - rs111795035 no chr17 78966008 G intronic - - - - G->C; hom; QUAL=131;DP=10 G->C; hom; QUAL=10.4;DP=1 - - - - rs8080539 no chr17 79059230 C intronic - - - - C->T; hom; QUAL=114;DP=8 C->T; hom; QUAL=10.4;DP=1 - - - - rs8080815 no chr17 79508400 T exonic ENST00000537152.1 ENSG00000185504 C17orf70 - - T->C; hom; QUAL=71.5;DP=4 T->C; het; QUAL=128;DP=19 - - nonsynonymous SNV nonsynonymous SNV rs386432317 no chr17 79880025 C UTR3 - - - - C->G; het; QUAL=4.13;DP=22 C->G; het; QUAL=83;DP=32 - - - - no rs id no chr17 80164137 C intronic - - - - C->T; hom; QUAL=60;DP=3 C->T; hom; QUAL=35.8;DP=2 - - - - rs74523455 no chr17 80191817 C UTR5 - - - - C->T; hom; QUAL=222;DP=12 C->T; hom; QUAL=66;DP=3 - - - - rs10852794 no chr17 8046772 C exonic ENST00000581082.1 ENSG00000179094 PER1 - - C->G; hom; QUAL=64.5;DP=4 C->G; hom; QUAL=86.3;DP=5 - - nonsynonymous SNV nonsynonymous SNV rs2585405 no chr17 947840 A intronic - - - - A->G; het; QUAL=4.77;DP=1 A->G; hom; QUAL=10.4;DP=1 - - - - rs733789 no chr17 947856 A intronic - - - - A->C; hom; QUAL=7.8;DP=1 A->C; hom; QUAL=7.8;DP=1 - - - - rs733790 no chr18 21062427 T UTR3 - - - - T->G; het; QUAL=14.2;DP=7 T->G; het; QUAL=179;DP=12 - - - - no rs id no chr18 3264349 A intronic - - - - A->G; hom; QUAL=41.8;DP=2 A->G; hom; QUAL=10.4;DP=1 - - - - rs949303 no chr18 33779855 C exonic ENST00000261326.5 ENSG00000075643 MOCOS - - C->T; hom; QUAL=152;DP=22 C->T; hom; QUAL=145;DP=9 - - nonsynonymous SNV nonsynonymous SNV rs386602004 down chr18 34654895 C UTR3 - - - - C->A; hom; QUAL=38.8;DP=2 C->A; het; QUAL=80;DP=12 - - - - no rs id no chr18 46916284 T intronic - - - - T->G; hom; QUAL=77.5;DP=4 T->G; hom; QUAL=68;DP=3 - - - - rs72642462 no chr18 47561225 G intronic - - - - G->C; hom; QUAL=20.8;DP=2 G->C; hom; QUAL=140;DP=8 - - - - rs7234190 no chr18 47810351 A exonic ENST00000412036.2 ENSG00000154832 CXXC1 - - A->G; hom; QUAL=35.8;DP=2 A->G; hom; QUAL=170;DP=8 - - nonsynonymous SNV nonsynonymous SNV rs7228084 no chr19 10679240 C exonic ENST00000393599.2 ENSG00000129355 CDKN2D - - C->G; hom; QUAL=95.5;DP=4 C->G; hom; QUAL=32.8;DP=2 - - nonsynonymous SNV nonsynonymous SNV rs1968445 no chr19 10689955 G intronic - - - - G->A; hom; QUAL=222;DP=12 G->A; hom; QUAL=10.4;DP=1 - - - - rs12460574 no chr19 13010643 G UTR3 - - - - G->T; hom; QUAL=176;DP=17 G->T; hom; QUAL=77.5;DP=8 - - - - rs9384 no chr19 13263055 C UTR5 - - - - C->G; hom; QUAL=65.5;DP=4 C->G; het; QUAL=37;DP=18 - - - - rs55724477 no chr19 13949281 C intergenic - - - - C->T; hom; QUAL=10.4;DP=1 C->T; hom; QUAL=7.8;DP=1 - - - - no rs id no chr19 14594025 C intronic - - - - C->T; hom; QUAL=63;DP=3 C->T; hom; QUAL=106;DP=5 - - - - rs12974884 no chr19 14594075 T intronic - - - - T->C; hom; QUAL=57;DP=3 T->C; hom; QUAL=215;DP=10 - - - - rs12982274 no chr19 14594138 T intronic - - - - T->C; het; QUAL=57;DP=5 T->C; hom; QUAL=104;DP=5 - - - - rs12982526 no chr19 14602107 G intronic - - - - G->T; hom; QUAL=125;DP=6 G->T; hom; QUAL=187;DP=10 - - - - rs7258106 no chr19 15513054 G intronic - - - - G->A; hom; QUAL=68;DP=3 G->A; hom; QUAL=7.8;DP=1 - - - - rs12972998 no chr19 17452993 A UTR3 - - - - A->G; hom; QUAL=7.8;DP=1 A->G; hom; QUAL=7.8;DP=1 - - - - rs113487706 no chr19 17453014 G UTR3 - - - - G->A; hom; QUAL=7.8;DP=1 G->A; hom; QUAL=7.8;DP=1 - - - - rs7508138 no chr19 17619429 A ncRNA_intronic - - - - A->G; hom; QUAL=13.9;DP=2 A->G; het; QUAL=4.77;DP=1 - - - - rs1896782 no chr19 1842884 G intronic - - - - G->A; hom; QUAL=74.5;DP=4 G->A; het; QUAL=47;DP=10 - - - - rs12462721 no chr19 1842919 A intronic - - - - A->G; hom; QUAL=68.5;DP=4 A->G; het; QUAL=97;DP=8 - - - - rs12460791 no chr19 18671740 C ncRNA_intronic - - - - C->T; hom; QUAL=7.8;DP=1 C->T; hom; QUAL=7.8;DP=1 - - - - rs59798925 no chr19 23537146 A intronic - - - - A->T; hom; QUAL=151;DP=12 A->T; hom; QUAL=7.8;DP=1 - - - - rs8109526 no chr19 30200276 T intronic - - - - T->C; hom; QUAL=155;DP=10 T->C; hom; QUAL=28.8;DP=2 - - - - rs2866311 no chr19 33125055 A intronic - - - - A->G; hom; QUAL=148;DP=12 A->G; hom; QUAL=107;DP=5 - - - - rs17693106 no chr19 34287386 C UTR5 - - - - C->T; hom; QUAL=7.8;DP=1 C->T; hom; QUAL=20.8;DP=2 - - - - rs28524164 no chr19 34304903 C UTR3 - - - - C->G; hom; QUAL=129;DP=9 C->G; het; QUAL=225;DP=40 - - - - rs14810 no chr19 35507016 C ncRNA_intronic - - - - C->T; hom; QUAL=11.8;DP=4 C->T; hom; QUAL=189;DP=8 - - - - rs59900101 no chr19 35507073 A ncRNA_intronic - - - - A->G; hom; QUAL=87.5;DP=4 A->G; hom; QUAL=87.5;DP=4 - - - - rs59344976 no chr19 36261208 A ncRNA_intronic - - - - A->G; hom; QUAL=154;DP=16 A->G; hom; QUAL=152;DP=10 - - - - no rs id no chr19 36595436 A exonic ENST00000401500.2 ENSG00000075702 WDR62 - - A->C; hom; QUAL=222;DP=27 A->C; hom; QUAL=222;DP=19 - - nonsynonymous SNV nonsynonymous SNV rs1008328 down chr19 3752563 G exonic ENST00000316757.3 ENSG00000011132 APBA3 - - G->A; hom; QUAL=142;DP=12 G->A; hom; QUAL=66;DP=3 - - synonymous SNV synonymous SNV rs80066100 no chr19 38771083 T intronic - - - - T->C; hom; QUAL=158;DP=19 T->C; hom; QUAL=175;DP=18 - - - - rs58633465 no chr19 39955673 A exonic ENST00000402194.2 ENSG00000196235 SUPT5H - - A->C; het; QUAL=88;DP=6 A->C; het; QUAL=3.54;DP=30 - - nonsynonymous SNV nonsynonymous SNV no rs id no chr19 40481883 C intronic - - - - C->T; hom; QUAL=222;DP=32 C->T; hom; QUAL=7.8;DP=1 - - - - rs62108923 no chr19 4050278 T intronic - - - - T->C; hom; QUAL=35.8;DP=2 T->C; hom; QUAL=63;DP=3 - - - - rs4807539 no chr19 40711333 A intronic - - - - A->G; hom; QUAL=7.8;DP=1 A->G; hom; QUAL=11.3;DP=3 - - - - rs892117 no chr19 40789926 C intronic - - - - C->T; hom; QUAL=131;DP=7 C->T; hom; QUAL=38.8;DP=2 - - - - rs12459567 no chr19 4107668 G intronic - - - - G->A; hom; QUAL=151;DP=16 G->A; hom; QUAL=222;DP=18 - - - - rs11671735 no chr19 41125770 C intronic - - - - C->T; hom; QUAL=80.5;DP=4 C->T; hom; QUAL=222;DP=12 - - - - rs2604908 no chr19 41129842 C exonic ENST00000601032.1 ENSG00000090006 LTBP4 - - C->T; het; QUAL=70;DP=5 C->T; het; QUAL=6.2;DP=13 - - stopgain SNV stopgain SNV rs7367 no chr19 41681915 G intergenic - - - - G->A; hom; QUAL=222;DP=20 G->A; hom; QUAL=156;DP=11 - - - - rs1616286 no chr19 42369743 T intronic - - - - T->C; het; QUAL=48;DP=17 T->C; het; QUAL=159;DP=13 - - - - rs7259596 no chr19 42703833 A exonic ENST00000336034.4 ENSG00000160570 DEDD2 - - A->G; hom; QUAL=109;DP=8 A->G; het; QUAL=29;DP=3 - - nonsynonymous SNV nonsynonymous SNV rs2303652 no chr19 43013363 A exonic ENST00000161559.6 ENSG00000079385 CEACAM1 - - A->G; hom; QUAL=41.8;DP=2 A->G; hom; QUAL=104;DP=5 - - nonsynonymous SNV nonsynonymous SNV rs11666350 no chr19 44008355 C UTR5 - - - - C->A; hom; QUAL=90.1;DP=7 C->A; het; QUAL=155;DP=20 - - - - rs2599448 no chr19 44246970 C intronic - - - - C->T; hom; QUAL=222;DP=25 C->T; hom; QUAL=32.8;DP=2 - - - - rs7256472 no chr19 45874412 A upstream - - - - A->C; hom; QUAL=28.8;DP=2 A->C; hom; QUAL=72;DP=3 - - - - rs3916788 no chr19 45921149 T intronic - - - - T->C; hom; QUAL=10.4;DP=1 T->C; hom; QUAL=154;DP=10 - - - - no rs id no chr19 46286714 A UTR3 - - - - A->C; hom; QUAL=143;DP=13 A->C; hom; QUAL=10.4;DP=1 - - - - rs2070736 no chr19 46499537 A UTR5 - - - - A->G; hom; QUAL=155;DP=10 A->G; hom; QUAL=106;DP=5 - - - - rs8111976 no chr19 46695739 T ncRNA_intronic - - - - T->C; hom; QUAL=105;DP=10 T->C; het; QUAL=18.1;DP=4 - - - - no rs id no chr19 46868960 A intronic - - - - A->G; hom; QUAL=32.8;DP=2 A->G; hom; QUAL=60.3;DP=5 - - - - rs8105297 no chr19 47283835 T intronic - - - - T->C; het; QUAL=31;DP=16 T->C; het; QUAL=73;DP=36 - - - - no rs id no chr19 47507468 G UTR3 - - - - G->A; hom; QUAL=60;DP=3 G->A; het; QUAL=4.77;DP=1 - - - - rs1052668 no chr19 48592109 T intronic - - - - T->C; hom; QUAL=222;DP=32 T->C; hom; QUAL=133;DP=7 - - - - rs441644 no chr19 49377086 T exonic ENST00000200453.5 ENSG00000087074 PPP1R15A - - T->C; het; QUAL=225;DP=134 T->C; het; QUAL=225;DP=76 - - nonsynonymous SNV nonsynonymous SNV rs611251 down chr19 49426954 A downstream - - - - A->G; hom; QUAL=80.5;DP=4 A->G; hom; QUAL=166;DP=12 - - - - no rs id no chr19 50099901 C exonic ENST00000418929.2 ENSG00000126464 PRR12 - - C->T; hom; QUAL=99.1;DP=6 C->T; hom; QUAL=56.5;DP=4 - - nonsynonymous SNV nonsynonymous SNV no rs id no chr19 50168871 G UTR5 - - - - G->A; hom; QUAL=174;DP=17 G->A; het; QUAL=88;DP=9 - - - - rs386564449 no chr19 50410363 C UTR3 - - - - C->T; het; QUAL=77;DP=6 C->T; het; QUAL=86;DP=24 - - - - rs11083988 no chr19 52299675 G intronic - - - - G->A; hom; QUAL=45.8;DP=2 G->A; hom; QUAL=222;DP=20 - - - - rs4802866 no chr19 53307658 C intronic - - - - C->A; hom; QUAL=148;DP=12 C->A; hom; QUAL=147;DP=11 - - - - rs7255800 no chr19 53453777 C exonic ENST00000357666.4 ENSG00000180257 ZNF816 - - C->T; hom; QUAL=140;DP=10 C->T; hom; QUAL=222;DP=30 - - synonymous SNV synonymous SNV rs8110062 no chr19 53936777 T ncRNA_intronic - - - - T->C; hom; QUAL=165;DP=12 T->C; hom; QUAL=94.3;DP=5 - - - - rs11084245 no chr19 53943838 C ncRNA_intronic - - - - C->T; hom; QUAL=173;DP=18 C->T; hom; QUAL=165;DP=12 - - - - rs7246687 no chr19 54495049 A upstream - - - - A->G; hom; QUAL=127;DP=7 A->G; het; QUAL=117;DP=16 - - - - rs3810245 no chr19 54495932 A UTR5 - - - - A->G; hom; QUAL=222;DP=39 A->G; hom; QUAL=222;DP=21 - - - - rs3810244 no chr19 57802806 C exonic ENST00000537645.1 ENSG00000197714 ZNF460 - - C->T; het; QUAL=162;DP=18 C->T; het; QUAL=68;DP=60 - - synonymous SNV synonymous SNV rs2041109 no chr19 57809978 A intergenic - - - - A->G; het; QUAL=27;DP=20 A->G; het; QUAL=119;DP=24 - - - - no rs id no chr19 57812712 C intergenic - - - - C->T; het; QUAL=128;DP=34 C->T; het; QUAL=78;DP=50 - - - - rs2361124 no chr19 57812726 A intergenic - - - - A->T; het; QUAL=110;DP=35 A->T; het; QUAL=82;DP=49 - - - - rs2361123 no chr19 58385762 C exonic ENST00000435989.2 ENSG00000204514 ZNF814 - - C->G; hom; QUAL=7.8;DP=1 C->G; hom; QUAL=65.1;DP=8 - - synonymous SNV synonymous SNV rs199732634 no chr19 58424907 A intronic - - - - A->G; hom; QUAL=147;DP=11 A->G; hom; QUAL=7.8;DP=1 - - - - rs10412003 no chr19 59093999 A ncRNA_exonic - - - - A->G; het; QUAL=58;DP=22 A->G; het; QUAL=84;DP=12 - - - - no rs id no chr19 649110 G intronic - - - - G->C; hom; QUAL=137;DP=9 G->C; hom; QUAL=63.5;DP=4 - - - - rs2040736 no chr19 8921033 C UTR3 - - - - C->T; hom; QUAL=152;DP=11 C->T; hom; QUAL=53;DP=3 - - - - rs250316 no chr2 100027789 C intronic - - - - C->T; hom; QUAL=161;DP=18 C->T; hom; QUAL=80.5;DP=4 - - - - rs13420293 no chr2 10053858 G intronic - - - - G->A; hom; QUAL=147;DP=12 G->A; hom; QUAL=115;DP=9 - - - - no rs id no chr2 101638888 A exonic ENST00000409318.1 ENSG00000204634 TBC1D8 - - A->G; hom; QUAL=60;DP=3 A->G; het; QUAL=5.46;DP=12 - - synonymous SNV synonymous SNV rs386585127 no chr2 10193069 A UTR3 - - - - A->T; hom; QUAL=10.4;DP=1 A->T; het; QUAL=76;DP=16 - - - - rs72786612 no chr2 10722877 C intronic - - - - C->T; hom; QUAL=182;DP=24 C->T; hom; QUAL=173;DP=15 - - - - rs10803723 no chr2 109513601 A exonic ENST00000409271.1 ENSG00000135960 EDAR - - A->G; het; QUAL=181;DP=28 A->G; het; QUAL=225;DP=92 - - nonsynonymous SNV nonsynonymous SNV rs3827760 down chr2 109547048 T intronic - - - - T->C; hom; QUAL=77.5;DP=4 T->C; het; QUAL=225;DP=24 - - - - rs899259 no chr2 109601804 C intronic - - - - C->T; hom; QUAL=142;DP=8 C->T; hom; QUAL=41.8;DP=2 - - - - rs260678 no chr2 112228828 T ncRNA_intronic - - - - T->C; hom; QUAL=7.8;DP=1 T->C; hom; QUAL=85.5;DP=4 - - - - rs140064193 no chr2 112813163 G UTR5 - - - - G->A; hom; QUAL=113;DP=6 G->A; het; QUAL=104;DP=15 - - - - rs10176769 no chr2 130807780 G ncRNA_exonic - - - - G->C; hom; QUAL=44;DP=10 G->C; hom; QUAL=33.1;DP=6 - - - - rs55647081 no chr2 130813458 T intergenic - - - - T->C; hom; QUAL=183;DP=25 T->C; hom; QUAL=192;DP=11 - - - - rs4536603 no chr2 130817693 T intergenic - - - - T->C; hom; QUAL=10.4;DP=1 T->C; hom; QUAL=50;DP=3 - - - - no rs id no chr2 130821470 G intergenic - - - - G->A; hom; QUAL=7.8;DP=1 G->A; hom; QUAL=10.4;DP=1 - - - - rs61277558 no chr2 132044753 A exonic ENST00000416266.1 ENSG00000178206 CYP4F31P - - A->C; hom; QUAL=36.5;DP=4 A->C; hom; QUAL=12;DP=2 - - synonymous SNV synonymous SNV no rs id no chr2 160076309 A exonic ENST00000454300.1 ENSG00000115183 TANC1 - - A->G; hom; QUAL=163;DP=17 A->G; het; QUAL=71;DP=6 - - synonymous SNV synonymous SNV rs11903200 no chr2 170427350 T intronic - - - - T->C; hom; QUAL=156;DP=15 T->C; hom; QUAL=35.8;DP=2 - - - - no rs id no chr2 170427467 T intronic - - - - T->C; hom; QUAL=157;DP=15 T->C; hom; QUAL=27.8;DP=2 - - - - no rs id no chr2 178119204 A intronic - - - - A->C; hom; QUAL=10.4;DP=1 A->C; hom; QUAL=28.8;DP=2 - - - - rs386503713 no chr2 178127089 A intronic - - - - A->G; hom; QUAL=120;DP=6 A->G; hom; QUAL=30.8;DP=4 - - - - rs34009885 no chr2 191799592 A UTR3 - - - - A->G; hom; QUAL=85.5;DP=4 A->G; het; QUAL=158;DP=20 - - - - rs1045208 no chr2 192170389 A intronic - - - - A->G; hom; QUAL=23;DP=3 A->G; hom; QUAL=146;DP=6 - - - - rs1973069 no chr2 201683695 T intronic - - - - T->C; hom; QUAL=171;DP=15 T->C; hom; QUAL=119;DP=6 - - - - rs2881880 no chr2 204087037 A intronic - - - - A->G; hom; QUAL=172;DP=16 A->G; hom; QUAL=30.8;DP=2 - - - - rs10178417 no chr2 211030469 G intronic - - - - G->A; hom; QUAL=45.8;DP=2 G->A; hom; QUAL=102;DP=5 - - - - rs263692 no chr2 217364452 C intronic - - - - C->G; het; QUAL=225;DP=26 C->G; het; QUAL=214;DP=19 - - - - rs284573 no chr2 219264107 G intronic - - - - G->A; hom; QUAL=103;DP=4 G->A; hom; QUAL=118;DP=7 - - - - rs2739049 no chr2 219523433 T UTR5 - - - - T->G; hom; QUAL=7.8;DP=1 T->G; hom; QUAL=35.8;DP=2 - - - - rs4674324 no chr2 220249908 T intronic - - - - T->C; hom; QUAL=123;DP=7 T->C; hom; QUAL=119;DP=6 - - - - rs1877868 no chr2 220367923 T ncRNA_intronic - - - - T->C; hom; QUAL=41.8;DP=2 T->C; hom; QUAL=41.8;DP=2 - - - - rs4672930 no chr2 233245141 T exonic ENST00000392027.2 ENSG00000163283 ALPP - - T->C; het; QUAL=5.46;DP=12 T->C; het; QUAL=158;DP=29 - - synonymous SNV synonymous SNV rs2260309 down chr2 234753008 G intronic - - - - G->A; hom; QUAL=60;DP=3 G->A; hom; QUAL=35.8;DP=2 - - - - rs169925 no chr2 236403607 C intronic - - - - C->A; hom; QUAL=7.8;DP=1 C->A; hom; QUAL=23.8;DP=2 - - - - rs3738998 no chr2 241373531 T intergenic - - - - T->C; hom; QUAL=57.1;DP=6 T->C; hom; QUAL=100;DP=5 - - - - rs371136599 no chr2 241558936 C intronic - - - - C->T; hom; QUAL=152;DP=34 C->T; hom; QUAL=40.5;DP=5 - - - - rs10933621 no chr2 241562379 C intronic - - - - C->T; hom; QUAL=96.3;DP=5 C->T; het; QUAL=131;DP=19 - - - - rs11886370 no chr2 242189829 C intronic - - - - C->T; het; QUAL=111;DP=27 C->T; hom; QUAL=85.5;DP=4 - - - - rs61332497 no chr2 242576357 T exonic ENST00000407315.1 ENSG00000176946 THAP4 - - T->G; het; QUAL=4.77;DP=1 T->G; het; QUAL=41;DP=19 - - nonsynonymous SNV nonsynonymous SNV no rs id no chr2 242594510 T intronic - - - - T->C; hom; QUAL=150;DP=16 T->C; hom; QUAL=35.8;DP=2 - - - - rs146085946 no chr2 242611374 A intronic - - - - A->G; hom; QUAL=85.5;DP=4 A->G; hom; QUAL=28.8;DP=2 - - - - rs148264135 no chr2 26259885 A intronic - - - - A->G; hom; QUAL=7.8;DP=1 A->G; hom; QUAL=50;DP=3 - - - - rs6709595 no chr2 33809471 C UTR3 - - - - C->G; hom; QUAL=7.8;DP=1 C->G; hom; QUAL=68;DP=3 - - - - rs7596614 no chr2 38561431 T intronic - - - - T->C; hom; QUAL=117;DP=6 T->C; hom; QUAL=133;DP=7 - - - - no rs id no chr2 39246683 C intronic - - - - C->T; hom; QUAL=158;DP=13 C->T; hom; QUAL=84.3;DP=5 - - - - rs2888585 no chr2 39316301 T intronic - - - - T->C; hom; QUAL=66;DP=3 T->C; hom; QUAL=7.8;DP=1 - - - - rs378698 no chr2 39324295 T intronic - - - - T->C; hom; QUAL=38.8;DP=2 T->C; hom; QUAL=68;DP=3 - - - - no rs id no chr2 39326835 C intronic - - - - C->G; hom; QUAL=7.8;DP=1 C->G; hom; QUAL=35.8;DP=2 - - - - rs297153 no chr2 39512437 T intronic - - - - T->C; hom; QUAL=153;DP=6 T->C; hom; QUAL=136;DP=8 - - - - rs12151392 no chr2 39524739 C intronic - - - - C->T; hom; QUAL=106;DP=5 C->T; hom; QUAL=7.8;DP=1 - - - - rs12622941 no chr2 44446931 T intronic - - - - T->A; hom; QUAL=165;DP=14 T->A; hom; QUAL=45.8;DP=2 - - - - rs5024499 no chr2 44540241 C intronic - - - - C->T; hom; QUAL=45.8;DP=2 C->T; hom; QUAL=149;DP=9 - - - - rs1372080 no chr2 47398394 G intronic - - - - G->A; hom; QUAL=125;DP=7 G->A; hom; QUAL=176;DP=9 - - - - rs815816 no chr2 66619220 C ncRNA_exonic - - - - C->T; hom; QUAL=48.8;DP=2 C->T; het; QUAL=105;DP=16 - - - - no rs id no chr2 69550652 G UTR3 - - - - G->A; hom; QUAL=146;DP=9 G->A; het; QUAL=225;DP=39 - - - - rs10185336 no chr2 70068652 G intronic - - - - G->T; hom; QUAL=35.8;DP=2 G->T; hom; QUAL=64.5;DP=4 - - - - no rs id no chr2 75101454 T exonic ENST00000290573.2 ENSG00000159399 HK2 - - T->C; hom; QUAL=7.8;DP=1 T->C; het; QUAL=85;DP=5 - - synonymous SNV synonymous SNV rs2229622 down chr2 96605951 T intronic - - - - T->C; hom; QUAL=81.5;DP=4 T->C; hom; QUAL=167;DP=8 - - - - no rs id no chr2 96627032 T intronic - - - - T->G; hom; QUAL=113;DP=15 T->G; hom; QUAL=198;DP=13 - - - - rs4530407 no chr2 99811590 T exonic ENST00000410042.1 ENSG00000273155 MRPL30 - - T->G; het; QUAL=95;DP=15 T->G; het; QUAL=85;DP=25 - - synonymous SNV synonymous SNV no rs id no chr20 21295509 G intronic - - - - G->T; hom; QUAL=50;DP=3 G->T; hom; QUAL=222;DP=16 - - - - rs4813425 no chr20 21308812 G intronic - - - - G->A; hom; QUAL=41.8;DP=2 G->A; hom; QUAL=45.8;DP=2 - - - - rs6047380 no chr20 2445533 A intronic - - - - A->C; hom; QUAL=10.4;DP=1 A->C; hom; QUAL=7.8;DP=1 - - - - rs75586636 no chr20 25670729 T intronic - - - - T->C; het; QUAL=133;DP=44 T->C; hom; QUAL=146;DP=9 - - - - no rs id no chr20 30137432 A intronic - - - - A->G; hom; QUAL=38.8;DP=2 A->G; hom; QUAL=222;DP=18 - - - - rs6059929 no chr20 30137474 C intronic - - - - C->T; hom; QUAL=41.8;DP=2 C->T; hom; QUAL=222;DP=14 - - - - rs6059930 no chr20 30261562 G intronic - - - - G->C; hom; QUAL=92.5;DP=4 G->C; hom; QUAL=38.8;DP=2 - - - - rs6060621 no chr20 30266845 A intronic - - - - A->G; het; QUAL=32;DP=4 A->G; hom; QUAL=144;DP=11 - - - - rs6060652 no chr20 30287328 T ncRNA_intronic - - - - T->G; hom; QUAL=212;DP=10 T->G; hom; QUAL=87.5;DP=4 - - - - rs1994251 no chr20 3191915 A intronic - - - - A->G; hom; QUAL=173;DP=16 A->G; hom; QUAL=222;DP=16 - - - - no rs id no chr20 32101266 A intronic - - - - A->G; hom; QUAL=109;DP=4 A->G; hom; QUAL=38.8;DP=2 - - - - no rs id no chr20 32259315 G intronic - - - - G->A; het; QUAL=125;DP=13 G->A; hom; QUAL=7.8;DP=1 - - - - no rs id no chr20 33402047 T intronic - - - - T->C; hom; QUAL=79.3;DP=5 T->C; hom; QUAL=94.3;DP=5 - - - - no rs id no chr20 34377460 C intronic - - - - C->T; hom; QUAL=7.8;DP=1 C->T; hom; QUAL=97.3;DP=5 - - - - rs6142445 no chr20 34696092 A intronic - - - - A->G; hom; QUAL=110;DP=6 A->G; hom; QUAL=57;DP=3 - - - - no rs id no chr20 3828856 C intronic - - - - C->A; hom; QUAL=180;DP=28 C->A; hom; QUAL=94.3;DP=5 - - - - rs6084495 no chr20 3849859 A downstream - - - - A->G; hom; QUAL=28.8;DP=3 A->G; het; QUAL=106;DP=22 - - - - no rs id no chr20 389984 C intronic - - - - C->T; hom; QUAL=137;DP=12 C->T; hom; QUAL=35.8;DP=2 - - - - rs4815586 no chr20 390702 G intronic - - - - G->C; hom; QUAL=60;DP=3 G->C; hom; QUAL=41.8;DP=2 - - - - rs145976650 no chr20 390801 C intronic - - - - C->T; hom; QUAL=48.8;DP=2 C->T; hom; QUAL=222;DP=16 - - - - rs149689056 no chr20 390858 T intronic - - - - T->C; hom; QUAL=42.8;DP=2 T->C; het; QUAL=121;DP=9 - - - - rs145482638 no chr20 396689 G intronic - - - - G->A; hom; QUAL=63;DP=3 G->A; het; QUAL=81;DP=8 - - - - rs140285933 no chr20 402710 A intronic - - - - A->G; hom; QUAL=137;DP=10 A->G; hom; QUAL=27.8;DP=12 - - - - rs2057251 no chr20 416149 A UTR3 - - - - A->G; hom; QUAL=63;DP=3 A->G; hom; QUAL=188;DP=10 - - - - rs6695 no chr20 43517041 C intronic - - - - C->T; hom; QUAL=176;DP=20 C->T; het; QUAL=37;DP=7 - - - - rs2284265 no chr20 43522725 A intronic - - - - A->G; hom; QUAL=175;DP=16 A->G; hom; QUAL=7.8;DP=1 - - - - rs16989474 no chr20 43522834 C intronic - - - - C->T; hom; QUAL=176;DP=16 C->T; hom; QUAL=7.8;DP=1 - - - - rs6031855 no chr20 443132 A UTR5 - - - - A->G; hom; QUAL=150;DP=16 A->G; het; QUAL=118;DP=16 - - - - no rs id no chr20 46215767 C intronic - - - - C->T; hom; QUAL=148;DP=9 C->T; het; QUAL=19.1;DP=20 - - - - rs72645213 no chr20 47690490 A intronic - - - - A->G; hom; QUAL=10.4;DP=1 A->G; hom; QUAL=108;DP=6 - - - - no rs id no chr20 47793587 T intronic - - - - T->C; hom; QUAL=149;DP=9 T->C; hom; QUAL=63;DP=3 - - - - no rs id no chr20 48720687 T intronic - - - - T->C; hom; QUAL=42.8;DP=2 T->C; hom; QUAL=85.5;DP=4 - - - - rs6020266 no chr20 52187612 G ncRNA_intronic - - - - G->C; hom; QUAL=142;DP=10 G->C; hom; QUAL=83.5;DP=4 - - - - rs8184575 no chr20 5552847 G intronic - - - - G->C; hom; QUAL=10.4;DP=1 G->C; hom; QUAL=119;DP=6 - - - - rs6085211 no chr20 5566109 C intronic - - - - C->T; hom; QUAL=174;DP=16 C->T; hom; QUAL=93.3;DP=22 - - - - rs6053519 no chr20 5569822 G intronic - - - - G->C; hom; QUAL=10.4;DP=1 G->C; hom; QUAL=60;DP=3 - - - - rs6038214 no chr20 57253296 A UTR3 - - - - A->G; hom; QUAL=142;DP=8 A->G; hom; QUAL=60;DP=3 - - - - rs4812024 no chr20 6056356 G UTR3 - - - - G->A; hom; QUAL=56;DP=3 G->A; het; QUAL=115;DP=10 - - - - rs1059391 no chr20 60634716 C intronic - - - - C->A; hom; QUAL=178;DP=21 C->A; hom; QUAL=7.8;DP=1 - - - - rs6061411 no chr20 60825595 C intronic - - - - C->T; hom; QUAL=71.5;DP=23 C->T; hom; QUAL=117;DP=6 - - - - rs6062168 no chr20 60835649 C intronic - - - - C->G; hom; QUAL=42.8;DP=2 C->G; hom; QUAL=57;DP=3 - - - - rs4925363 no chr20 60858758 C intronic - - - - C->T; hom; QUAL=145;DP=9 C->T; hom; QUAL=160;DP=16 - - - - rs35636653 no chr21 27423131 C intronic - - - - C->T; hom; QUAL=109;DP=4 C->T; hom; QUAL=222;DP=17 - - - - rs2830026 no chr21 27496900 T intronic - - - - T->C; hom; QUAL=164;DP=24 T->C; hom; QUAL=134;DP=9 - - - - rs9305280 no chr21 27541944 A ncRNA_intronic - - - - A->G; hom; QUAL=95.5;DP=4 A->G; hom; QUAL=165;DP=14 - - - - rs469420 no chr21 30375018 G intergenic - - - - G->A; het; QUAL=93;DP=19 G->A; hom; QUAL=35.8;DP=2 - - - - rs73190194 no chr21 34125155 A intronic - - - - A->G; hom; QUAL=7.8;DP=1 A->G; hom; QUAL=95.5;DP=4 - - - - rs13052412 no chr21 38086271 G intronic - - - - G->A; hom; QUAL=143;DP=8 G->A; hom; QUAL=117;DP=6 - - - - rs2243490 no chr21 38092039 A intronic - - - - A->C; hom; QUAL=209;DP=10 A->C; hom; QUAL=222;DP=22 - - - - rs2070650 no chr21 38336120 C intronic - - - - C->T; hom; QUAL=222;DP=20 C->T; hom; QUAL=7.8;DP=1 - - - - rs11701986 no chr21 38503762 T intronic - - - - T->G; hom; QUAL=106;DP=6 T->G; hom; QUAL=100;DP=5 - - - - rs4261789 no chr21 42582424 T intronic - - - - T->C; hom; QUAL=38.8;DP=2 T->C; hom; QUAL=7.8;DP=1 - - - - rs914180 no chr21 44324365 G exonic ENST00000354250.2 ENSG00000160194 NDUFV3 - - G->A; hom; QUAL=7.8;DP=1 G->A; hom; QUAL=7.8;DP=1 - - nonsynonymous SNV nonsynonymous SNV rs386501252 no chr21 45131795 C intergenic - - - - C->T; hom; QUAL=7.8;DP=1 C->T; hom; QUAL=7.8;DP=1 - - - - rs2329594 no chr21 45211607 A intronic - - - - A->G; hom; QUAL=159;DP=18 A->G; hom; QUAL=149;DP=10 - - - - rs1964982 no chr21 45661290 T upstream - - - - T->C; hom; QUAL=94.5;DP=4 T->C; het; QUAL=29;DP=4 - - - - no rs id no chr21 46942371 A intronic - - - - A->G; hom; QUAL=41.8;DP=2 A->G; hom; QUAL=7.8;DP=1 - - - - rs9982301 no chr21 47661235 C ncRNA_exonic - - - - C->T; hom; QUAL=38.8;DP=2 C->T; hom; QUAL=139;DP=13 - - - - rs3788252 no chr21 47696582 T intronic - - - - T->C; hom; QUAL=135;DP=8 T->C; hom; QUAL=35.8;DP=2 - - - - no rs id no chr21 9911785 C ncRNA_intronic - - - - C->T; hom; QUAL=163;DP=18 C->T; hom; QUAL=128;DP=8 - - - - rs368264694 no chr21 9911815 T ncRNA_intronic - - - - T->C; hom; QUAL=158;DP=18 T->C; hom; QUAL=127;DP=8 - - - - rs371290492 no chr21 9955322 C ncRNA_intronic - - - - C->T; hom; QUAL=60;DP=3 C->T; hom; QUAL=32.8;DP=2 - - - - no rs id no chr21 9957676 A ncRNA_intronic - - - - A->C; hom; QUAL=35.8;DP=2 A->C; hom; QUAL=222;DP=14 - - - - no rs id no chr21 9962753 T ncRNA_intronic - - - - T->A; hom; QUAL=138;DP=10 T->A; hom; QUAL=122;DP=8 - - - - rs371948973 no chr22 21291329 C intronic - - - - C->A; hom; QUAL=38.8;DP=2 C->A; hom; QUAL=120;DP=6 - - - - rs7287892 no chr22 21838339 C ncRNA_exonic - - - - C->T; hom; QUAL=94.1;DP=7 C->T; hom; QUAL=121;DP=7 - - - - rs201760046 no chr22 31667125 T exonic ENST00000444929.2 ENSG00000182541 LIMK2 - - T->G; het; QUAL=15.1;DP=46 T->G; het; QUAL=31;DP=44 - - nonsynonymous SNV nonsynonymous SNV no rs id no chr22 32081254 A UTR3 - - - - A->C; hom; QUAL=150;DP=9 A->C; hom; QUAL=161;DP=11 - - - - no rs id no chr22 38612031 A UTR3 - - - - A->C; het; QUAL=133;DP=20 A->C; hom; QUAL=41.8;DP=4 - - - - no rs id no chr22 39414772 A UTR3 - - - - A->G; het; QUAL=9.52;DP=11 A->G; het; QUAL=73;DP=5 - - - - no rs id no chr22 39644273 G intergenic - - - - G->A; hom; QUAL=10.4;DP=1 G->A; hom; QUAL=106;DP=5 - - - - rs130651 no chr22 40723709 A UTR3 - - - - A->G; hom; QUAL=42.8;DP=2 A->G; hom; QUAL=10.4;DP=1 - - - - rs139918 no chr22 40984968 T intronic - - - - T->C; hom; QUAL=167;DP=8 T->C; hom; QUAL=114;DP=6 - - - - no rs id no chr22 41517903 A intronic - - - - A->G; hom; QUAL=45.8;DP=2 A->G; hom; QUAL=7.8;DP=1 - - - - rs1983674 no chr22 45123841 C intronic - - - - C->G; hom; QUAL=35.8;DP=2 C->G; hom; QUAL=7.8;DP=1 - - - - rs5765943 no chr22 45250631 A intronic - - - - A->G; het; QUAL=57;DP=5 A->G; hom; QUAL=35.8;DP=2 - - - - no rs id no chr22 46496760 A intronic - - - - A->G; hom; QUAL=35.8;DP=2 A->G; het; QUAL=4.77;DP=1 - - - - rs6009080 no chr22 48033371 G ncRNA_intronic - - - - G->A; hom; QUAL=45.8;DP=2 G->A; hom; QUAL=95.3;DP=5 - - - - rs738717 no chr22 48130194 T ncRNA_intronic - - - - T->C; hom; QUAL=32.8;DP=2 T->C; hom; QUAL=79.5;DP=4 - - - - rs132192 no chr22 48140748 G ncRNA_intronic - - - - G->C; hom; QUAL=38.8;DP=2 G->C; hom; QUAL=7.8;DP=1 - - - - rs4823687 no chr22 48200143 G ncRNA_intronic - - - - G->A; hom; QUAL=45.8;DP=2 G->A; hom; QUAL=138;DP=11 - - - - no rs id no chr3 100292452 G intronic - - - - G->C; hom; QUAL=63;DP=3 G->A; hom; QUAL=38.8;DP=2 - - - - no rs id no chr3 105471508 G intronic - - - - G->T; hom; QUAL=153;DP=13 G->T; hom; QUAL=40;DP=3 - - - - rs4894947 no chr3 105559381 T intronic - - - - T->C; hom; QUAL=150;DP=9 T->C; hom; QUAL=10.4;DP=1 - - - - rs11924926 no chr3 111440689 C intronic - - - - C->T; hom; QUAL=41.8;DP=2 C->T; hom; QUAL=60;DP=3 - - - - rs9877859 no chr3 122442813 T intronic - - - - T->C; hom; QUAL=30.8;DP=2 T->C; het; QUAL=4.77;DP=1 - - - - rs80268099 no chr3 123634046 G exonic ENST00000419247.1 ENSG00000175455 CCDC14 - - G->A; hom; QUAL=132;DP=8 G->A; hom; QUAL=57;DP=3 - - stoploss SNV stoploss SNV rs2700373 no chr3 126180820 G exonic ENST00000336332.5 ENSG00000070476 ZXDC - - G->A; het; QUAL=133;DP=35 G->A; het; QUAL=98;DP=12 - - nonsynonymous SNV nonsynonymous SNV rs16837497 no chr3 126194357 G exonic ENST00000336332.5 ENSG00000070476 ZXDC - - G->C; hom; QUAL=222;DP=15 G->C; hom; QUAL=7.8;DP=1 - - nonsynonymous SNV nonsynonymous SNV rs7624748 no chr3 129539734 A intronic - - - - A->G; hom; QUAL=119;DP=6 A->G; het; QUAL=4.77;DP=1 - - - - rs2717248 no chr3 136574501 A exonic ENST00000446465.2 ENSG00000168917 SLC35G2 - - A->G; hom; QUAL=89.5;DP=4 A->G; hom; QUAL=68;DP=3 - - nonsynonymous SNV nonsynonymous SNV rs1052618 down chr3 149095470 G UTR5 - - - - G->A; hom; QUAL=156;DP=10 G->A; het; QUAL=59;DP=4 - - - - rs73152606 no chr3 149236566 C UTR3 - - - - C->T; hom; QUAL=222;DP=29 C->T; hom; QUAL=90.5;DP=4 - - - - rs191861175 no chr3 150259942 T UTR3 - - - - T->C; hom; QUAL=7.8;DP=1 T->C; hom; QUAL=117;DP=6 - - - - rs8052 no chr3 150262250 T exonic ENST00000479209.1 ENSG00000120742 SERP1 - - T->G; het; QUAL=97;DP=24 T->C; het; QUAL=49;DP=22 - - nonsynonymous SNV nonsynonymous SNV no rs id no chr3 152022890 C intronic - - - - C->T; hom; QUAL=140;DP=8 C->T; hom; QUAL=7.8;DP=1 - - - - rs6784925 no chr3 15456343 T exonic ENST00000383789.5 ENSG00000206562 METTL6 - - T->C; hom; QUAL=41.8;DP=2 T->C; hom; QUAL=10.4;DP=1 - - synonymous SNV synonymous SNV no rs id no chr3 15886992 A intronic - - - - A->T; hom; QUAL=93.5;DP=4 A->T; hom; QUAL=184;DP=8 - - - - rs7611203 no chr3 160968086 A exonic ENST00000472947.1 ENSG00000169251 NMD3 - - A->G; hom; QUAL=50;DP=3 A->G; het; QUAL=96;DP=14 - - synonymous SNV synonymous SNV no rs id no chr3 171175289 G intronic - - - - G->A; hom; QUAL=123;DP=7 G->A; hom; QUAL=141;DP=9 - - - - rs80307611 no chr3 17200091 T UTR3 - - - - T->C; hom; QUAL=68;DP=3 T->C; hom; QUAL=35.8;DP=2 - - - - rs7610560 no chr3 176912899 C intronic - - - - C->T; het; QUAL=114;DP=33 C->T; hom; QUAL=36.8;DP=2 - - - - rs12493005 no chr3 176912910 A intronic - - - - A->G; het; QUAL=129;DP=33 A->G; hom; QUAL=7.8;DP=1 - - - - rs12486557 no chr3 178905519 G intronic - - - - G->A; hom; QUAL=57;DP=3 G->A; hom; QUAL=222;DP=14 - - - - rs7650809 no chr3 186529064 G ncRNA_exonic - - - - G->C; hom; QUAL=7.8;DP=1 G->C; hom; QUAL=7.8;DP=1 - - - - no rs id no chr3 190024856 G UTR3 - - - - G->A; hom; QUAL=119;DP=6 G->A; het; QUAL=145;DP=31 - - - - rs1060679 no chr3 27416999 T UTR3 - - - - T->C; hom; QUAL=10.4;DP=1 T->C; hom; QUAL=41.8;DP=2 - - - - rs1051545 no chr3 31647716 G intronic - - - - G->A; hom; QUAL=10.4;DP=1 G->A; hom; QUAL=172;DP=9 - - - - rs9812889 no chr3 3193388 T intronic - - - - T->G; hom; QUAL=83.5;DP=4 T->G; hom; QUAL=57;DP=3 - - - - rs1669345 no chr3 32208195 G UTR3 - - - - G->A; hom; QUAL=57;DP=3 G->A; hom; QUAL=83.5;DP=4 - - - - rs115291555 no chr3 46717492 C UTR3 - - - - C->G; hom; QUAL=7.8;DP=1 C->G; hom; QUAL=7.8;DP=1 - - - - rs4683269 no chr3 47453659 G exonic ENST00000265562.4 ENSG00000076201 PTPN23 - - G->T; hom; QUAL=45.8;DP=2 G->T; het; QUAL=118;DP=7 - - synonymous SNV synonymous SNV rs147959396 no chr3 50041313 C intronic - - - - C->T; hom; QUAL=138;DP=10 C->T; hom; QUAL=38.8;DP=2 - - - - rs6765484 no chr3 50146094 T intronic - - - - T->A; hom; QUAL=71.5;DP=4 T->A; hom; QUAL=33;DP=3 - - - - rs3733133 no chr3 56944019 T intronic - - - - T->C; hom; QUAL=126;DP=7 T->C; hom; QUAL=110;DP=6 - - - - rs9882574 no chr3 57306961 G UTR3 - - - - G->A; hom; QUAL=164;DP=8 G->A; hom; QUAL=172;DP=8 - - - - rs1913302 no chr3 57564748 T intronic - - - - T->G; hom; QUAL=115;DP=6 T->G; hom; QUAL=166;DP=13 - - - - rs13063507 no chr3 59999690 T intronic - - - - T->C; hom; QUAL=35.8;DP=2 T->C; hom; QUAL=7.8;DP=1 - - - - rs13067835 no chr3 69070563 A ncRNA_UTR3 - - - - A->C; hom; QUAL=10.4;DP=1 A->C; hom; QUAL=7.8;DP=1 - - - - rs1053555 no chr3 73116437 C UTR3 - - - - C->G; hom; QUAL=66;DP=3 C->G; hom; QUAL=188;DP=12 - - - - rs1122474 no chr3 98307696 T exonic ENST00000264193.2 ENSG00000080819 CPOX - - T->G; hom; QUAL=46;DP=3 T->G; het; QUAL=225;DP=33 - - nonsynonymous SNV nonsynonymous SNV rs1131857 no chr4 10117728 G intronic - - - - G->A; hom; QUAL=7.8;DP=1 G->A; hom; QUAL=102;DP=5 - - - - rs35782983 no chr4 106336119 A intronic - - - - A->G; hom; QUAL=161;DP=11 A->G; hom; QUAL=7.8;DP=1 - - - - rs2713822 no chr4 123131035 A exonic ENST00000388738.3 ENSG00000138688 KIAA1109 - - A->G; het; QUAL=86;DP=35 A->G; het; QUAL=12.3;DP=15 - - nonsynonymous SNV nonsynonymous SNV no rs id no chr4 1240299 T intronic - - - - T->G; hom; QUAL=52.5;DP=5 T->G; hom; QUAL=116;DP=6 - - - - rs730831 no chr4 13224988 G intergenic - - - - G->T; hom; QUAL=158;DP=11 G->T; hom; QUAL=45.8;DP=2 - - - - rs4834938 no chr4 13610206 T exonic ENST00000040738.5 ENSG00000038219 BOD1L1 - - T->G; hom; QUAL=133;DP=14 T->G; hom; QUAL=128;DP=12 - - nonsynonymous SNV nonsynonymous SNV no rs id no chr4 1380033 A UTR3 - - - - A->G; hom; QUAL=42.8;DP=2 A->G; hom; QUAL=151;DP=10 - - - - rs6838561 no chr4 139086857 G ncRNA_UTR3 - - - - G->A; hom; QUAL=66;DP=3 G->A; het; QUAL=108;DP=20 - - - - rs386495068 no chr4 139092719 A ncRNA_exonic - - - - A->G; hom; QUAL=151;DP=6 A->G; het; QUAL=92;DP=12 - - - - rs13120371 no chr4 139100372 C exonic ENST00000280612.5 ENSG00000151012 SLC7A11 - - C->T; hom; QUAL=222;DP=27 C->T; hom; QUAL=97.3;DP=5 - - synonymous SNV synonymous SNV rs386593325 no chr4 139103520 A exonic ENST00000280612.5 ENSG00000151012 SLC7A11 - - A->G; het; QUAL=61;DP=16 A->C; het; QUAL=53;DP=31 - - synonymous SNV nonsynonymous SNV no rs id no chr4 139110577 A intronic - - - - A->G; hom; QUAL=7.8;DP=1 A->G; hom; QUAL=130;DP=7 - - - - rs6537201 no chr4 139120683 T intronic - - - - T->C; hom; QUAL=156;DP=14 T->C; hom; QUAL=68;DP=3 - - - - rs4863772 no chr4 139127861 A intronic - - - - A->G; hom; QUAL=222;DP=20 A->G; hom; QUAL=222;DP=14 - - - - rs12506333 no chr4 139155376 C intronic - - - - C->T; hom; QUAL=106;DP=4 C->T; hom; QUAL=10.4;DP=1 - - - - rs6826686 no chr4 14476023 G ncRNA_exonic - - - - G->A; het; QUAL=71;DP=29 G->T; het; QUAL=20;DP=8 - - - - no rs id no chr4 170169748 A intronic - - - - A->G; hom; QUAL=89.3;DP=5 A->G; hom; QUAL=99.3;DP=5 - - - - rs144817324 no chr4 170947720 A intronic - - - - A->C; hom; QUAL=67.5;DP=4 A->C; hom; QUAL=38.8;DP=2 - - - - rs78685422 no chr4 25793813 A intronic - - - - A->T; het; QUAL=4.77;DP=1 A->T; hom; QUAL=122;DP=6 - - - - rs11944026 no chr4 39455756 G UTR3 - - - - G->T; het; QUAL=48;DP=15 G->T; het; QUAL=63;DP=22 - - - - no rs id no chr4 39532887 C ncRNA_intronic - - - - C->T; hom; QUAL=221;DP=10 C->T; hom; QUAL=138;DP=11 - - - - rs13137317 no chr4 39551008 T ncRNA_intronic - - - - T->C; hom; QUAL=119;DP=6 T->C; hom; QUAL=106;DP=5 - - - - no rs id no chr4 39551179 T ncRNA_exonic - - - - T->C; hom; QUAL=110;DP=7 T->C; hom; QUAL=222;DP=18 - - - - no rs id no chr4 39738205 C intronic - - - - C->T; hom; QUAL=38.8;DP=2 C->T; hom; QUAL=48.8;DP=2 - - - - rs386578842 no chr4 40464231 G intronic - - - - G->A; hom; QUAL=10.4;DP=1 G->A; hom; QUAL=99.3;DP=5 - - - - rs278948 no chr4 57219613 C exonic ENST00000513376.1 ENSG00000157426 AASDH - - C->T; hom; QUAL=38.8;DP=2 C->T; hom; QUAL=10.4;DP=1 - - stopgain SNV stopgain SNV rs17086696 no chr4 57774176 C UTR5 - - - - C->G; hom; QUAL=159;DP=18 C->G; hom; QUAL=28.8;DP=2 - - - - rs781654 no chr4 7050377 C intronic - - - - C->A; hom; QUAL=222;DP=12 C->A; hom; QUAL=53;DP=3 - - - - rs9985704 no chr4 7057106 G UTR3 - - - - G->C; hom; QUAL=89.5;DP=4 G->C; hom; QUAL=161;DP=21 - - - - rs10937782 no chr4 76589145 C intronic - - - - C->T; hom; QUAL=120;DP=7 C->T; hom; QUAL=10.4;DP=1 - - - - rs62321018 no chr4 77102182 G exonic ENST00000264896.2 ENSG00000138760 SCARB2 - - G->C; het; QUAL=71;DP=39 G->C; het; QUAL=25;DP=96 - - synonymous SNV synonymous SNV no rs id no chr4 83821324 A ncRNA_exonic - - - - A->G; het; QUAL=136;DP=33 A->G; het; QUAL=225;DP=40 - - - - rs2305876 no chr4 84526275 T UTR3 - - - - T->C; hom; QUAL=77.1;DP=6 T->C; hom; QUAL=41.8;DP=2 - - - - rs1521531 no chr4 88083107 T UTR3 - - - - T->C; hom; QUAL=94.3;DP=5 T->C; hom; QUAL=53;DP=4 - - - - rs3193672 no chr5 1091373 A intronic - - - - A->G; hom; QUAL=222;DP=36 A->G; hom; QUAL=50;DP=3 - - - - rs4975658 no chr5 118627271 A intronic - - - - A->G; hom; QUAL=156;DP=12 A->G; hom; QUAL=153;DP=10 - - - - rs1966479 no chr5 118645920 G intronic - - - - G->C; hom; QUAL=153;DP=10 G->C; hom; QUAL=23.8;DP=2 - - - - rs6879919 no chr5 126868434 C intronic - - - - C->A; hom; QUAL=117;DP=6 C->A; hom; QUAL=71.5;DP=4 - - - - rs173025 no chr5 132202399 T UTR5 - - - - T->C; hom; QUAL=69.5;DP=4 T->C; hom; QUAL=85.3;DP=5 - - - - rs30178 no chr5 137910129 A intronic - - - - A->T; hom; QUAL=171;DP=22 A->T; hom; QUAL=74.5;DP=4 - - - - rs256009 no chr5 138318158 G intronic - - - - G->A; hom; QUAL=170;DP=13 G->A; hom; QUAL=87.5;DP=4 - - - - rs11747454 no chr5 138659158 T intronic - - - - T->C; hom; QUAL=222;DP=20 T->C; hom; QUAL=133;DP=7 - - - - rs6866346 no chr5 139559099 T intronic - - - - T->C; hom; QUAL=222;DP=12 T->C; hom; QUAL=32.8;DP=2 - - - - rs11750863 no chr5 140987771 T intronic - - - - T->C; hom; QUAL=126;DP=7 T->C; hom; QUAL=113;DP=7 - - - - no rs id no chr5 141714412 T ncRNA_intronic - - - - T->C; hom; QUAL=162;DP=12 T->C; hom; QUAL=222;DP=34 - - - - rs6870020 no chr5 1478156 C intronic - - - - C->T; hom; QUAL=125;DP=8 C->T; hom; QUAL=198;DP=10 - - - - rs4975548 no chr5 150402490 G intronic - - - - G->C; hom; QUAL=45.8;DP=2 G->C; hom; QUAL=10.4;DP=1 - - - - rs3792796 no chr5 16784019 G intronic - - - - G->A; hom; QUAL=110;DP=6 G->A; hom; QUAL=143;DP=6 - - - - rs386570097 no chr5 177560565 G UTR5 - - - - G->A; hom; QUAL=7.8;DP=1 G->A; hom; QUAL=7.8;DP=1 - - - - rs7380947 no chr5 179130988 G intronic - - - - G->A; hom; QUAL=162;DP=11 G->A; hom; QUAL=41.8;DP=2 - - - - rs9329087 no chr5 179131013 C intronic - - - - C->T; hom; QUAL=113;DP=22 C->T; hom; QUAL=95.5;DP=4 - - - - rs35320050 no chr5 179228070 G intronic - - - - G->A; hom; QUAL=157;DP=21 G->A; hom; QUAL=72;DP=3 - - - - no rs id no chr5 179259030 G intronic - - - - G->A; hom; QUAL=102;DP=5 G->A; hom; QUAL=81.5;DP=4 - - - - rs269445 no chr5 279434 G intronic - - - - G->A; hom; QUAL=222;DP=14 G->A; hom; QUAL=103;DP=7 - - - - rs12515562 no chr5 32159329 A intronic - - - - A->G; hom; QUAL=139;DP=8 A->G; hom; QUAL=140;DP=8 - - - - rs661309 no chr5 40830927 C UTR3 - - - - C->T; hom; QUAL=123;DP=16 C->T; hom; QUAL=14.9;DP=2 - - - - rs1631660 no chr5 49964256 C intronic - - - - C->A; hom; QUAL=56;DP=4 C->A; het; QUAL=109;DP=13 - - - - no rs id no chr5 49964333 G intronic - - - - G->C; hom; QUAL=41.8;DP=2 G->C; hom; QUAL=143;DP=8 - - - - no rs id no chr5 52286010 C ncRNA_exonic - - - - C->T; hom; QUAL=7.8;DP=1 C->T; hom; QUAL=75;DP=3 - - - - rs26681 no chr5 52389428 A UTR3 - - - - A->G; het; QUAL=53;DP=7 A->G; het; QUAL=225;DP=76 - - - - rs6880055 no chr5 52389455 A UTR3 - - - - A->G; het; QUAL=118;DP=11 A->G; het; QUAL=225;DP=99 - - - - rs7719848 no chr5 65120144 T UTR3 - - - - T->C; hom; QUAL=20;DP=10 T->C; hom; QUAL=111;DP=4 - - - - rs10096 no chr5 65453185 A intronic - - - - A->G; hom; QUAL=41.8;DP=2 A->G; hom; QUAL=10.4;DP=1 - - - - rs27086 no chr5 67529747 T intronic - - - - T->C; hom; QUAL=41.8;DP=2 T->C; hom; QUAL=10.4;DP=1 - - - - rs386688818 no chr5 72858024 T intronic - - - - T->C; het; QUAL=92;DP=7 T->C; hom; QUAL=74.5;DP=4 - - - - no rs id no chr5 76787808 G intronic - - - - G->C; hom; QUAL=135;DP=11 G->C; hom; QUAL=74.5;DP=4 - - - - rs41104 no chr5 94175381 T intronic - - - - T->C; hom; QUAL=112;DP=7 T->C; hom; QUAL=32.8;DP=2 - - - - rs386569371 no chr6 101271991 A intronic - - - - A->G; hom; QUAL=41.8;DP=2 A->G; hom; QUAL=142;DP=9 - - - - no rs id no chr6 108241013 A intronic - - - - A->G; hom; QUAL=156;DP=16 A->G; hom; QUAL=92.3;DP=5 - - - - rs2179346 no chr6 10825471 T intronic - - - - T->C; hom; QUAL=174;DP=21 T->C; hom; QUAL=16.9;DP=2 - - - - rs3857545 no chr6 11194976 G ncRNA_intronic - - - - G->T; hom; QUAL=183;DP=25 G->T; hom; QUAL=154;DP=14 - - - - rs3798729 no chr6 11195061 C ncRNA_intronic - - - - C->G; hom; QUAL=183;DP=25 C->G; hom; QUAL=91.3;DP=5 - - - - rs3798730 no chr6 159188128 A intronic - - - - A->G; hom; QUAL=74.5;DP=4 A->G; hom; QUAL=11.8;DP=4 - - - - rs2242318 no chr6 160211700 C intronic - - - - C->G; hom; QUAL=30.8;DP=2 C->G; hom; QUAL=125;DP=10 - - - - rs9355278 no chr6 16415621 G intronic - - - - G->A; hom; QUAL=142;DP=8 G->A; hom; QUAL=7.8;DP=1 - - - - rs113755256 no chr6 16415733 T intronic - - - - T->G; hom; QUAL=139;DP=8 T->G; het; QUAL=4.77;DP=1 - - - - rs6932569 no chr6 16458226 T intronic - - - - T->C; hom; QUAL=87.5;DP=4 T->C; hom; QUAL=86.5;DP=4 - - - - rs139864180 no chr6 16595948 G intronic - - - - G->A; hom; QUAL=109;DP=4 G->A; hom; QUAL=55.1;DP=6 - - - - rs236932 no chr6 16732291 A intronic - - - - A->G; hom; QUAL=158;DP=15 A->G; hom; QUAL=10.4;DP=1 - - - - rs1150638 no chr6 170061736 A intronic - - - - A->G; hom; QUAL=162;DP=12 A->G; hom; QUAL=87.5;DP=4 - - - - rs73240748 no chr6 18225882 T UTR3 - - - - T->C; het; QUAL=100;DP=22 T->G; het; QUAL=63;DP=10 - - - - no rs id no chr6 2095234 T intronic - - - - T->C; hom; QUAL=156;DP=15 T->C; hom; QUAL=35.8;DP=2 - - - - rs2026446 no chr6 2369733 C ncRNA_intronic - - - - C->G; hom; QUAL=123;DP=7 C->G; hom; QUAL=66;DP=3 - - - - rs4296927 no chr6 27357308 T intronic - - - - T->C; hom; QUAL=77.5;DP=4 T->C; hom; QUAL=83.5;DP=4 - - - - rs6904883 no chr6 27357456 G intronic - - - - G->C; hom; QUAL=77.5;DP=4 G->C; hom; QUAL=41.8;DP=2 - - - - rs6925606 no chr6 30131349 T UTR5 - - - - T->C; hom; QUAL=222;DP=20 T->C; hom; QUAL=142;DP=12 - - - - rs369834849 no chr6 30580620 T intronic - - - - T->C; hom; QUAL=102;DP=6 T->C; hom; QUAL=151;DP=13 - - - - rs118183872 no chr6 31233643 T intergenic - - - - T->C; hom; QUAL=146;DP=9 T->C; hom; QUAL=28.8;DP=4 - - - - no rs id no chr6 3157399 A intronic - - - - A->G; hom; QUAL=7.8;DP=1 A->G; hom; QUAL=41.8;DP=2 - - - - rs909962 no chr6 33244255 T UTR3 - - - - T->G; het; QUAL=4.77;DP=46 T->A; het; QUAL=35;DP=22 - - - - no rs id no chr6 33613367 G intronic - - - - G->T; hom; QUAL=66;DP=3 G->T; hom; QUAL=10.4;DP=2 - - - - rs9394158 no chr6 33634636 C intronic - - - - C->T; hom; QUAL=40.5;DP=4 C->T; hom; QUAL=138;DP=9 - - - - rs9357163 no chr6 33658534 G intronic - - - - G->A; hom; QUAL=7.8;DP=1 G->A; hom; QUAL=63.5;DP=4 - - - - rs10947430 no chr6 34385241 T UTR3 - - - - T->G; het; QUAL=32;DP=8 T->C; het; QUAL=96;DP=27 - - - - rs112078820 no chr6 35378778 C UTR5 - - - - C->T; hom; QUAL=222;DP=31 C->T; hom; QUAL=155;DP=14 - - - - rs2016520 no chr6 42664658 G UTR3 - - - - G->A; hom; QUAL=45.8;DP=2 G->A; hom; QUAL=85.5;DP=4 - - - - rs405043 no chr6 42664676 G UTR3 - - - - G->A; hom; QUAL=45.8;DP=2 G->A; hom; QUAL=76.5;DP=4 - - - - rs405059 no chr6 42753404 G intronic - - - - G->A; hom; QUAL=48.8;DP=2 G->A; hom; QUAL=42.8;DP=2 - - - - rs2894478 no chr6 7237463 T intronic - - - - T->C; hom; QUAL=138;DP=9 T->C; hom; QUAL=118;DP=7 - - - - rs2714334 no chr6 74303531 T UTR3 - - - - T->C; het; QUAL=51;DP=18 T->C; het; QUAL=11.3;DP=8 - - - - no rs id no chr6 75776984 A intergenic - - - - A->G; hom; QUAL=163;DP=8 A->G; hom; QUAL=7.8;DP=1 - - - - rs726242 no chr6 76325096 G intronic - - - - G->A; hom; QUAL=143;DP=11 G->A; hom; QUAL=156;DP=14 - - - - rs478934 no chr7 100731505 C exonic ENST00000306085.6 ENSG00000169871 TRIM56 - - C->G; hom; QUAL=23.8;DP=2 C->G; hom; QUAL=161;DP=7 - - synonymous SNV synonymous SNV rs4524722 no chr7 100734758 A intronic - - - - A->G; hom; QUAL=146;DP=9 A->G; hom; QUAL=101;DP=5 - - - - no rs id no chr7 101860931 A intronic - - - - A->T; hom; QUAL=85.5;DP=4 A->T; hom; QUAL=10.4;DP=1 - - - - rs372968 no chr7 1067403 G intronic - - - - G->A; hom; QUAL=7.8;DP=1 G->A; hom; QUAL=23.8;DP=2 - - - - rs74360401 no chr7 11133357 T intronic - - - - T->C; hom; QUAL=142;DP=10 T->C; hom; QUAL=63;DP=3 - - - - rs2906543 no chr7 117834049 A intergenic - - - - A->G; hom; QUAL=142;DP=8 A->G; hom; QUAL=7.8;DP=1 - - - - rs11543742 no chr7 1195215 A exonic ENST00000316495.3 ENSG00000178381 ZFAND2A - - A->C; hom; QUAL=222;DP=30 A->C; het; QUAL=125;DP=10 - - synonymous SNV synonymous SNV rs1133116 no chr7 127005073 C intergenic - - - - C->G; hom; QUAL=27.8;DP=2 C->G; hom; QUAL=77.5;DP=4 - - - - rs1361940 no chr7 127715902 T intronic - - - - T->C; hom; QUAL=222;DP=10 T->C; hom; QUAL=131;DP=7 - - - - rs322832 no chr7 128224522 G ncRNA_intronic - - - - G->T; hom; QUAL=162;DP=11 G->T; hom; QUAL=190;DP=8 - - - - rs62479757 no chr7 130567807 T ncRNA_intronic - - - - T->C; hom; QUAL=85.5;DP=4 T->C; hom; QUAL=10.4;DP=1 - - - - rs157911 no chr7 130578993 G ncRNA_intronic - - - - G->C; hom; QUAL=80.5;DP=4 G->C; hom; QUAL=85.1;DP=6 - - - - rs157923 no chr7 130582489 G ncRNA_intronic - - - - G->A; hom; QUAL=160;DP=12 G->A; hom; QUAL=135;DP=6 - - - - rs205757 no chr7 130590540 G ncRNA_intronic - - - - G->T; hom; QUAL=38.8;DP=2 G->T; het; QUAL=4.77;DP=1 - - - - rs205762 no chr7 130598236 G ncRNA_intronic - - - - G->T; hom; QUAL=222;DP=19 G->T; hom; QUAL=101;DP=6 - - - - rs205764 no chr7 130602136 G ncRNA_intronic - - - - G->C; hom; QUAL=85.5;DP=4 G->C; hom; QUAL=38.8;DP=2 - - - - rs157952 no chr7 130611079 C ncRNA_intronic - - - - C->T; hom; QUAL=35.8;DP=2 C->T; hom; QUAL=41.8;DP=2 - - - - rs139326117 no chr7 130616236 C ncRNA_exonic - - - - C->A; hom; QUAL=222;DP=14 C->A; hom; QUAL=7.8;DP=1 - - - - rs205716 no chr7 130623437 C intergenic - - - - C->T; hom; QUAL=7.8;DP=1 C->T; hom; QUAL=112;DP=7 - - - - rs205725 no chr7 134870201 T UTR3 - - - - T->C; hom; QUAL=38.5;DP=4 T->C; hom; QUAL=184;DP=32 - - - - rs8345 no chr7 140193194 G intergenic - - - - G->A; hom; QUAL=10.4;DP=1 G->A; het; QUAL=5.46;DP=2 - - - - rs386718471 no chr7 140193213 A intergenic - - - - A->G; het; QUAL=4.77;DP=1 A->G; het; QUAL=3.55;DP=3 - - - - rs4726837 no chr7 148427590 A intronic - - - - A->T; hom; QUAL=160;DP=6 A->T; hom; QUAL=94.3;DP=5 - - - - rs6464923 no chr7 148721233 G intronic - - - - G->A; hom; QUAL=83.5;DP=4 G->A; hom; QUAL=83.3;DP=5 - - - - rs6948711 no chr7 148725750 C upstream - - - - C->T; hom; QUAL=126;DP=7 C->T; hom; QUAL=7.8;DP=1 - - - - rs2306170 no chr7 1579371 C intronic - - - - C->T; hom; QUAL=32.8;DP=2 C->T; hom; QUAL=150;DP=7 - - - - rs3824071 no chr7 158416979 T upstream - - - - T->C; hom; QUAL=108;DP=6 T->C; hom; QUAL=128;DP=7 - - - - no rs id no chr7 158572652 A intronic - - - - A->G; hom; QUAL=38.8;DP=2 A->G; hom; QUAL=77.5;DP=4 - - - - rs712191 no chr7 2063476 T intronic - - - - T->C; hom; QUAL=41.8;DP=2 T->C; hom; QUAL=63;DP=3 - - - - rs6973622 no chr7 27650526 A intronic - - - - A->G; het; QUAL=4.77;DP=1 A->G; het; QUAL=100;DP=11 - - - - rs62454870 no chr7 2767077 G downstream - - - - G->A; hom; QUAL=38.8;DP=4 G->A; hom; QUAL=215;DP=25 - - - - rs798535 no chr7 28134636 T intronic - - - - T->A; hom; QUAL=180;DP=22 T->A; hom; QUAL=83.5;DP=4 - - - - no rs id no chr7 29286334 A intronic - - - - A->G; hom; QUAL=63;DP=3 A->G; hom; QUAL=10.4;DP=1 - - - - rs39092 no chr7 30499575 T UTR5 - - - - T->C; hom; QUAL=41.8;DP=2 T->C; hom; QUAL=116;DP=5 - - - - rs2906766 no chr7 30617474 T ncRNA_exonic - - - - T->C; hom; QUAL=183;DP=8 T->C; hom; QUAL=42.8;DP=2 - - - - rs38488 no chr7 32548931 T intronic - - - - T->A; hom; QUAL=169;DP=14 T->A; hom; QUAL=10.4;DP=1 - - - - rs375591519 no chr7 32768526 G ncRNA_exonic - - - - G->A; hom; QUAL=159;DP=11 G->A; hom; QUAL=35.8;DP=3 - - - - rs2893435 no chr7 32968136 G ncRNA_intronic - - - - G->A; hom; QUAL=157;DP=9 G->A; hom; QUAL=38.8;DP=2 - - - - rs4720085 no chr7 42958092 G UTR3 - - - - G->A; hom; QUAL=10.4;DP=1 G->A; hom; QUAL=41.8;DP=2 - - - - rs638171 no chr7 44098142 C intronic - - - - C->T; hom; QUAL=31;DP=16 C->T; hom; QUAL=10.4;DP=1 - - - - rs11773481 no chr7 45025542 C ncRNA_exonic - - - - C->T; hom; QUAL=222;DP=17 C->T; hom; QUAL=221;DP=12 - - - - rs3213657 no chr7 4795277 A intronic - - - - A->G; hom; QUAL=63;DP=3 A->G; hom; QUAL=79.3;DP=5 - - - - no rs id no chr7 4801973 G exonic ENST00000446823.1 ENSG00000164916 FOXK1 - - G->A; hom; QUAL=96.1;DP=6 G->A; hom; QUAL=122;DP=6 - - nonsynonymous SNV nonsynonymous SNV rs15715 no chr7 48128901 T UTR5 - - - - T->C; hom; QUAL=173;DP=35 T->C; hom; QUAL=222;DP=57 - - - - rs3763504 no chr7 48132391 C intronic - - - - C->T; het; QUAL=4.77;DP=1 C->T; hom; QUAL=170;DP=14 - - - - rs9639019 no chr7 48136339 T intronic - - - - T->C; hom; QUAL=7.8;DP=1 T->C; hom; QUAL=135;DP=11 - - - - rs7385009 no chr7 48140799 G intronic - - - - G->T; hom; QUAL=155;DP=11 G->T; hom; QUAL=100;DP=5 - - - - rs13228276 no chr7 50661917 A intronic - - - - A->G; hom; QUAL=7.8;DP=1 A->G; hom; QUAL=108;DP=12 - - - - rs376051131 no chr7 50673029 T exonic ENST00000398810.2 ENSG00000106070 GRB10 - - T->C; hom; QUAL=222;DP=29 T->C; hom; QUAL=222;DP=32 - - nonsynonymous SNV nonsynonymous SNV rs4947710 down chr7 50837579 G intronic - - - - G->C; hom; QUAL=116;DP=6 G->C; hom; QUAL=106;DP=5 - - - - rs757776 no chr7 5445756 T intronic - - - - T->C; hom; QUAL=94.3;DP=5 T->C; hom; QUAL=156;DP=7 - - - - rs10252168 no chr7 55134819 A intronic - - - - A->G; hom; QUAL=68;DP=3 A->G; hom; QUAL=38.8;DP=2 - - - - rs723526 no chr7 55278852 C UTR3 - - - - C->A; hom; QUAL=7.8;DP=2 C->A; het; QUAL=159;DP=14 - - - - rs7334 no chr7 5539958 C intronic - - - - C->T; hom; QUAL=97.3;DP=5 C->T; hom; QUAL=134;DP=8 - - - - rs7799622 no chr7 5542513 T intronic - - - - T->C; hom; QUAL=109;DP=5 T->C; hom; QUAL=7.8;DP=1 - - - - rs386602891 no chr7 56033424 C intronic - - - - C->T; hom; QUAL=160;DP=17 C->T; hom; QUAL=10.4;DP=1 - - - - rs112132543 no chr7 56033558 A intronic - - - - A->G; hom; QUAL=132;DP=9 A->G; hom; QUAL=222;DP=17 - - - - rs4470984 no chr7 564438 G ncRNA_intronic - - - - G->A; het; QUAL=4.77;DP=2 G->A; hom; QUAL=75.3;DP=5 - - - - rs143872265 no chr7 564581 G ncRNA_exonic - - - - G->A; hom; QUAL=101;DP=6 G->A; hom; QUAL=134;DP=6 - - - - rs9770574 no chr7 5955010 C intronic - - - - C->T; hom; QUAL=6.19;DP=12 C->T; hom; QUAL=17.8;DP=2 - - - - rs141468817 no chr7 63781804 T intronic - - - - T->C; hom; QUAL=174;DP=16 T->C; hom; QUAL=158;DP=11 - - - - rs599238 no chr7 63802516 A intronic - - - - A->G; hom; QUAL=91.5;DP=4 A->G; hom; QUAL=77.5;DP=4 - - - - rs1404678 no chr7 63821145 C intergenic - - - - C->T; hom; QUAL=54;DP=3 C->T; hom; QUAL=38.8;DP=2 - - - - rs6460142 no chr7 6449272 A UTR3 - - - - A->G; hom; QUAL=165;DP=29 A->G; het; QUAL=157;DP=42 - - - - rs386606722 no chr7 6510642 G intronic - - - - G->A; hom; QUAL=38.8;DP=2 G->A; hom; QUAL=127;DP=6 - - - - rs147919565 no chr7 7238096 A intronic - - - - A->G; hom; QUAL=120;DP=7 A->G; hom; QUAL=35.8;DP=2 - - - - rs149033305 no chr7 7250370 A intronic - - - - A->T; hom; QUAL=7.8;DP=1 A->T; hom; QUAL=178;DP=23 - - - - rs59388279 no chr7 7267787 G intronic - - - - G->T; hom; QUAL=10.4;DP=1 G->T; hom; QUAL=7.8;DP=1 - - - - rs6960832 no chr7 74173182 T ncRNA_UTR3 - - - - T->A; hom; QUAL=35.8;DP=2 T->A; het; QUAL=88;DP=10 - - - - rs2069301 no chr7 75047944 G UTR3 - - - - G->A; hom; QUAL=109;DP=8 G->A; het; QUAL=55;DP=27 - - - - rs376495903 no chr7 76111835 G exonic ENST00000429179.1 ENSG00000091073 DTX2 - - G->A; hom; QUAL=57;DP=3 G->A; hom; QUAL=121;DP=7 - - synonymous SNV synonymous SNV rs4236506 no chr7 8073359 T intronic - - - - T->A; hom; QUAL=143;DP=8 T->A; hom; QUAL=66;DP=3 - - - - rs4725056 no chr7 8073459 T intronic - - - - T->C; hom; QUAL=143;DP=8 T->C; hom; QUAL=60;DP=3 - - - - rs4725057 no chr7 91726927 A exonic ENST00000394534.2 ENSG00000127914 AKAP9 - - A->C; het; QUAL=225;DP=19 A->C; hom; QUAL=7.8;DP=1 - - synonymous SNV synonymous SNV rs1063243 no chr7 91742348 C UTR3 - - - - C->A; hom; QUAL=109;DP=4 C->A; hom; QUAL=45.8;DP=2 - - - - rs57122389 no chr7 97498573 A intronic - - - - A->C; het; QUAL=52;DP=5 A->C; hom; QUAL=104;DP=5 - - - - no rs id no chr7 99050323 G intronic - - - - G->A; hom; QUAL=123;DP=7 G->A; hom; QUAL=7.8;DP=1 - - - - rs45540134 no chr8 112195730 C ncRNA_exonic - - - - C->T; het; QUAL=3.54;DP=3 C->T; hom; QUAL=119;DP=7 - - - - rs201823686 no chr8 112195737 T ncRNA_exonic - - - - T->C; hom; QUAL=41.8;DP=2 T->C; hom; QUAL=113;DP=7 - - - - no rs id no chr8 12052475 G ncRNA_exonic - - - - G->C; hom; QUAL=7.8;DP=1 G->C; hom; QUAL=35.8;DP=2 - - - - rs76672192 no chr8 121742641 T intronic - - - - T->C; hom; QUAL=103;DP=4 T->C; hom; QUAL=60;DP=3 - - - - no rs id no chr8 128822709 A ncRNA_intronic - - - - A->G; hom; QUAL=162;DP=19 A->G; hom; QUAL=188;DP=9 - - - - rs10108514 no chr8 141656396 C intergenic - - - - C->T; hom; QUAL=41.8;DP=2 C->T; hom; QUAL=131;DP=8 - - - - rs11775532 no chr8 142218119 G UTR3 - - - - G->A; hom; QUAL=169;DP=19 G->A; hom; QUAL=66;DP=3 - - - - rs2288999 no chr8 144350854 A intronic - - - - A->G; hom; QUAL=123;DP=8 A->G; hom; QUAL=173;DP=17 - - - - rs1075645 no chr8 144363094 C ncRNA_exonic - - - - C->A; hom; QUAL=41.8;DP=2 C->A; hom; QUAL=222;DP=20 - - - - rs4419827 no chr8 144363134 C ncRNA_exonic - - - - C->T; hom; QUAL=45.8;DP=2 C->T; hom; QUAL=151;DP=10 - - - - no rs id no chr8 144777073 C UTR3 - - - - C->T; hom; QUAL=28.8;DP=2 C->T; hom; QUAL=10.4;DP=1 - - - - rs61348167 no chr8 145530644 T intronic - - - - T->C; hom; QUAL=77.3;DP=5 T->C; hom; QUAL=7.8;DP=1 - - - - rs7814279 no chr8 145651262 T UTR3 - - - - T->C; hom; QUAL=7.8;DP=1 T->C; hom; QUAL=222;DP=17 - - - - rs2272658 no chr8 16850498 C UTR3 - - - - C->G; hom; QUAL=169;DP=14 C->G; hom; QUAL=176;DP=16 - - - - rs1721100 no chr8 16858781 G intronic - - - - G->A; hom; QUAL=123;DP=8 G->A; hom; QUAL=214;DP=10 - - - - rs17514943 no chr8 17549493 T intronic - - - - T->C; hom; QUAL=115;DP=6 T->C; hom; QUAL=10.4;DP=1 - - - - rs182363 no chr8 18870837 T intronic - - - - T->G; hom; QUAL=35.8;DP=2 T->G; hom; QUAL=10.4;DP=1 - - - - rs73594632 no chr8 22927642 C ncRNA_intronic - - - - C->G; hom; QUAL=86.5;DP=4 C->G; hom; QUAL=161;DP=11 - - - - rs144853747 no chr8 22927696 T ncRNA_intronic - - - - T->C; hom; QUAL=35.8;DP=2 T->C; hom; QUAL=222;DP=22 - - - - rs113574384 no chr8 23018906 A intronic - - - - A->C; hom; QUAL=42.8;DP=2 A->C; hom; QUAL=41.8;DP=2 - - - - rs202171880 no chr8 29934036 A intronic - - - - A->G; hom; QUAL=129;DP=8 A->G; hom; QUAL=7.8;DP=1 - - - - rs4733316 no chr8 37922447 A intergenic - - - - A->G; hom; QUAL=168;DP=14 A->G; hom; QUAL=7.8;DP=1 - - - - no rs id no chr8 41475106 A ncRNA_intronic - - - - A->T; hom; QUAL=106;DP=5 A->T; hom; QUAL=48.8;DP=2 - - - - rs11784433 no chr8 48890247 A UTR3 - - - - A->G; het; QUAL=108;DP=18 A->G; het; QUAL=143;DP=24 - - - - rs1135031 no chr8 52766522 A intronic - - - - A->G; hom; QUAL=160;DP=18 A->G; hom; QUAL=96.3;DP=5 - - - - rs4618684 no chr8 56686035 C UTR5 - - - - C->T; hom; QUAL=118;DP=7 C->T; hom; QUAL=147;DP=10 - - - - rs2044812 no chr8 62560784 C intronic - - - - C->T; hom; QUAL=175;DP=17 C->T; hom; QUAL=156;DP=14 - - - - rs2350588 no chr8 62570278 G intronic - - - - G->T; hom; QUAL=142;DP=9 G->T; hom; QUAL=146;DP=10 - - - - rs67189750 no chr8 63941217 T intronic - - - - T->C; hom; QUAL=195;DP=8 T->C; hom; QUAL=10.4;DP=1 - - - - rs3824333 no chr8 8192229 A intronic - - - - A->C; hom; QUAL=68;DP=3 A->C; hom; QUAL=170;DP=14 - - - - rs2945908 no chr8 8222192 T intronic - - - - T->G; het; QUAL=128;DP=10 T->G; hom; QUAL=75;DP=3 - - - - rs11996133 no chr8 82748674 T intronic - - - - T->A; hom; QUAL=155;DP=32 T->A; hom; QUAL=32.8;DP=2 - - - - rs12674735 no chr8 9506176 C intronic - - - - C->T; hom; QUAL=175;DP=17 C->T; hom; QUAL=222;DP=11 - - - - rs6601341 no chr8 95273529 C intronic - - - - C->T; hom; QUAL=122;DP=8 C->T; hom; QUAL=69.3;DP=5 - - - - rs12386916 no chr9 127623432 T intronic - - - - T->A; hom; QUAL=7.8;DP=2 T->A; hom; QUAL=125;DP=11 - - - - rs3780594 no chr9 12821837 A UTR3 - - - - A->C; hom; QUAL=140;DP=8 A->C; het; QUAL=153;DP=16 - - - - no rs id no chr9 130567656 A intronic - - - - A->T; hom; QUAL=46;DP=3 A->T; hom; QUAL=154;DP=10 - - - - rs10819307 no chr9 130704975 T UTR3 - - - - T->C; hom; QUAL=158;DP=34 T->C; hom; QUAL=87.5;DP=4 - - - - rs3818510 no chr9 130742762 A UTR5 - - - - A->C; hom; QUAL=142;DP=10 A->C; hom; QUAL=13;DP=2 - - - - rs79356092 no chr9 130951342 T intronic - - - - T->A; hom; QUAL=80.5;DP=4 T->A; hom; QUAL=77.5;DP=4 - - - - rs12684314 no chr9 131018542 T UTR3 - - - - T->C; het; QUAL=226;DP=18 T->C; het; QUAL=9.52;DP=15 - - - - rs77168744 no chr9 131444773 T upstream - - - - T->C; hom; QUAL=222;DP=20 T->C; het; QUAL=115;DP=11 - - - - no rs id no chr9 131897551 A intronic - - - - A->G; het; QUAL=55;DP=16 A->G; hom; QUAL=89.5;DP=4 - - - - no rs id no chr9 132268255 T ncRNA_intronic - - - - T->C; hom; QUAL=151;DP=10 T->C; hom; QUAL=222;DP=11 - - - - rs1780457 no chr9 134330523 A exonic ENST00000458550.1 ENSG00000130723 PRRC2B - - A->C; het; QUAL=72;DP=36 A->G; het; QUAL=110;DP=29 - - nonsynonymous SNV nonsynonymous SNV no rs id down chr9 136196161 G intergenic - - - - G->C; hom; QUAL=60;DP=3 G->C; hom; QUAL=87.5;DP=4 - - - - rs12056960 no chr9 139118673 T exonic ENST00000358701.5 ENSG00000165661 QSOX2 - - T->C; hom; QUAL=222;DP=29 T->C; het; QUAL=201;DP=19 - - nonsynonymous SNV nonsynonymous SNV rs12380852 no chr9 139270876 G exonic ENST00000298532.2 ENSG00000165684 SNAPC4 - - G->A; het; QUAL=110;DP=11 G->A; hom; QUAL=176;DP=24 - - nonsynonymous SNV nonsynonymous SNV rs3812561 no chr9 139371786 A exonic ENST00000313050.7 ENSG00000148396 SEC16A - - A->C; hom; QUAL=39.5;DP=4 A->C; het; QUAL=225;DP=58 - - synonymous SNV synonymous SNV rs6560632 no chr9 139616742 A exonic ENST00000371692.4 ENSG00000165716 FAM69B - - A->G; hom; QUAL=24;DP=9 A->G; hom; QUAL=10.4;DP=1 - - nonsynonymous SNV nonsynonymous SNV rs945384 no chr9 139902214 A UTR3 - - - - A->G; hom; QUAL=144;DP=12 A->G; hom; QUAL=125;DP=7 - - - - rs10870161 no chr9 140178902 T intergenic - - - - T->C; hom; QUAL=80.5;DP=4 T->C; hom; QUAL=7.8;DP=1 - - - - rs7857229 no chr9 140449582 A UTR3 - - - - A->C; hom; QUAL=94.3;DP=5 A->C; het; QUAL=4.77;DP=1 - - - - rs10110 no chr9 140459873 A intronic - - - - A->G; hom; QUAL=72;DP=3 A->G; hom; QUAL=151;DP=6 - - - - rs140876555 no chr9 149210 G intronic - - - - G->T; hom; QUAL=35.8;DP=2 G->T; hom; QUAL=54;DP=6 - - - - rs200587022 no chr9 149299 G intronic - - - - G->C; hom; QUAL=63;DP=3 G->C; het; QUAL=133;DP=16 - - - - no rs id no chr9 19099459 C intronic - - - - C->T; hom; QUAL=142;DP=10 C->T; hom; QUAL=222;DP=12 - - - - rs28753724 no chr9 21591540 T intergenic - - - - T->C; hom; QUAL=177;DP=19 T->C; het; QUAL=4.77;DP=1 - - - - rs1869207 no chr9 33025503 G intronic - - - - G->A; hom; QUAL=113;DP=9 G->A; hom; QUAL=118;DP=5 - - - - rs2297216 no chr9 33111764 G UTR3 - - - - G->A; het; QUAL=49;DP=28 G->A; het; QUAL=61;DP=28 - - - - rs17326539 no chr9 33111788 T UTR3 - - - - T->C; het; QUAL=113;DP=21 T->C; het; QUAL=87;DP=34 - - - - rs16918998 no chr9 37441650 T exonic ENST00000307750.4 ENSG00000168795 ZBTB5 - - T->C; het; QUAL=14.2;DP=14 T->C; hom; QUAL=35.8;DP=2 - - nonsynonymous SNV nonsynonymous SNV rs17502738 no chr9 5461394 A intronic - - - - A->G; hom; QUAL=104;DP=5 A->G; hom; QUAL=87.5;DP=4 - - - - rs10123377 no chr9 7033514 A intronic - - - - A->G; hom; QUAL=89.5;DP=4 A->G; hom; QUAL=7.8;DP=1 - - - - rs386586631 no chr9 70647441 C UTR3 - - - - C->T; hom; QUAL=131;DP=10 C->T; het; QUAL=52;DP=6 - - - - no rs id no chr9 70647448 C UTR3 - - - - C->A; hom; QUAL=113;DP=10 C->A; het; QUAL=44;DP=6 - - - - no rs id no chr9 74361312 C intronic - - - - C->T; het; QUAL=66;DP=10 C->T; het; QUAL=76.1;DP=6 - - - - rs41316488 no chr9 85669972 C UTR3 - - - - C->T; het; QUAL=124;DP=20 C->T; het; QUAL=5.46;DP=26 - - - - no rs id no chr9 86267142 T intergenic - - - - T->G; hom; QUAL=170;DP=13 T->G; hom; QUAL=38.8;DP=2 - - - - rs2811924 no chr9 95892443 A intronic - - - - A->T; hom; QUAL=106;DP=5 A->T; hom; QUAL=38.8;DP=2 - - - - rs6479454 no chr9 96305564 A exonic ENST00000333936.5 ENSG00000048828 FAM120A - - A->G; het; QUAL=33;DP=15 A->G; het; QUAL=39;DP=25 - - nonsynonymous SNV nonsynonymous SNV no rs id no chr9 97795421 G intronic - - - - G->A; hom; QUAL=65.3;DP=5 G->A; hom; QUAL=104;DP=4 - - - - rs6479591 no chr9 97873435 G intronic - - - - G->A; hom; QUAL=158;DP=20 G->A; hom; QUAL=130;DP=7 - - - - rs2404457 no chr9 99278021 A exonic ENST00000412285.2 ENSG00000081377 CDC14B - - A->C; het; QUAL=89.1;DP=8 A->C; hom; QUAL=115;DP=6 - - nonsynonymous SNV nonsynonymous SNV no rs id no chrX 106206508 A intronic - - - - A->C; hom; QUAL=106;DP=5 A->C; hom; QUAL=162;DP=12 - - - - rs386826801 no chrX 106206578 A intronic - - - - A->G; hom; QUAL=106;DP=5 A->G; hom; QUAL=222;DP=24 - - - - rs1927310 no chrX 117907853 A exonic ENST00000371666.3 ENSG00000131724 IL13RA1 - - A->G; het; QUAL=75;DP=9 A->G; het; QUAL=53;DP=14 - - nonsynonymous SNV nonsynonymous SNV no rs id no chrX 132437337 G exonic ENST00000370828.3 ENSG00000076716 GPC4 - - G->A; hom; QUAL=222;DP=15 G->A; hom; QUAL=156;DP=11 - - nonsynonymous SNV nonsynonymous SNV rs1048369 down chrX 150840895 G exonic ENST00000370357.4 ENSG00000166049 PASD1 - - G->A; het; QUAL=40;DP=15 G->T; het; QUAL=96.1;DP=12 - - nonsynonymous SNV stopgain SNV no rs id no chrX 152613112 C exonic ENST00000421401.3 ENSG00000063587 ZNF275 - - C->T; hom; QUAL=60;DP=3 C->T; hom; QUAL=7.8;DP=1 - - synonymous SNV synonymous SNV rs7066295 no chrX 153582327 T exonic ENST00000422373.1 ENSG00000196924 FLNA - - T->C; hom; QUAL=222;DP=52 T->C; hom; QUAL=222;DP=131 - - stoploss SNV stoploss SNV no rs id no chrX 23804947 C downstream - - - - C->G; hom; QUAL=32.8;DP=2 C->G; hom; QUAL=89.5;DP=4 - - - - rs2002277 no chrX 37301047 G ncRNA_exonic - - - - G->A; hom; QUAL=10.4;DP=1 G->A; hom; QUAL=107;DP=6 - - - - no rs id no chrX 3785364 G ncRNA_exonic - - - - G->T; het; QUAL=100;DP=10 G->T; hom; QUAL=104;DP=12 - - - - no rs id no chrX 4460606 G intergenic - - - - G->C; hom; QUAL=64;DP=24 G->A; hom; QUAL=111;DP=12 - - - - rs146683290 no chrX 67262833 A UTR3 - - - - A->T; het; QUAL=134;DP=33 A->T; het; QUAL=85;DP=18 - - - - no rs id no chrX 67735048 A intronic - - - - A->G; hom; QUAL=7.8;DP=1 A->G; hom; QUAL=10.4;DP=1 - - - - no rs id no chrX 73463312 T ncRNA_intronic - - - - T->C; hom; QUAL=7.8;DP=1 T->C; het; QUAL=4.13;DP=22 - - - - no rs id no chrX 77220327 A ncRNA_exonic - - - - A->G; hom; QUAL=30.8;DP=2 A->G; hom; QUAL=10.4;DP=1 - - - - no rs id no Table S1. RNA-Seq results showed 929 SNPs between the gastric cancer cell lines AGS and AGS-EBV
-
EBVnGC sex age tumor location tumor size histological classification Lymph node metastasis male 64 Gastric antrum 4×3cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 50 Gastric body 4×9cm Ulcerative Adenocarcinoma, low differentiation LN metastasis male 52 Lesser curvature side 6×6cm Ulcerative Adenocarcinoma, low differentiation Porta hepatis LN metastasis male 38 Lesser curvature side d=10cm Ulcerative Adenocarcinoma, high differentiation Lesser curvature side LN metatasis male 55 Gastric angle d=3cm Ulcerative Adenocarcinoma, medium-low differentiation LN metastasis female 75 Gastric antrum d=4cm Ulcerative Mucous Adenocarcinoma, low differentiation No LN metastasis female 54 Gastric body 2×3.5cm, 4×3cm Ulcerative Adenocarcinoma, low differentiation LN metastasis male 38 Gastric antrum 9×6cm Ulcerative Adenocarcinoma, low differentiation LN metastasis female 75 Lesser curvature side 9×7cm Ulcerative Adenocarcinoma, low differentiation Greater curvature side LN metastasis male 47 Gastric angle 5×4cm Ulcerative Adenocarcinoma, low differentiation LN metastasis male 38 Gastric angle d=2cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis female 64 Cardia 3×4cm Ulcerative Mucous Adenocarcinoma, medium differentiation LN metastasis male 80 Gastric angle 3×3cm Ulcerative Adenocarcinoma, medium differentiation No LN metastasis female 38 Gastric angle d=2.5cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis female 44 Gastric antrum 3×2cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 59 Gastric antrum 9×7cm Ulcerative Adenocarcinoma, low differentiation LN metastasis male 38 Lesser curvature side d=7cm Ulcerative Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis male 74 Cardia 8×3cm Ulcerative signet ring cell carcinoma Lesser curvature side LN metatasis female 67 Stomach 5.5×6cm Ulcerative Mucous Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis female 27 Lesser curvature side 8×5cm Ulcerative Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis male 57 Gastric antrum d=3cm Ulcerative Adenocarcinoma, low differentiation LN metastasis female 40 Gastric antrum d=4.5cm Ulcerative Adenocarcinoma, low differentiation LN metastasis female 61 Gastric antrum d=5.5cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis female 71 Lesser curvature side d=3cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 54 Gastric antrum 8×6cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 57 Gastric antrum 5.5×5cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 60 Lesser curvature side 4×3.5cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 52 Lesser curvature side d=4cm Ulcerative Adenocarcinoma, low differentiation Greater curvature side LN metastasis male 44 Gastric antrum 5×5cm Ulcerative Adenocarcinoma, medium differentiation No LN metastasis male 68 Gastric antrum 6×3.5cm Ulcerative Adenocarcinoma, medium differentiation Greater and lesser curvature side LN metastasis female 58 Pylorus 4×3cm Ulcerative Mucous Adenocarcinoma, low differentiation LN metastasis male 72 Cardia d=2cm Ulcerative Adenocarcinoma, medium differentiation No LN metastasis male 36 Gastric antrum d=6cm Ulcerative Adenocarcinoma, low differentiation Lesser curvature side LN metatasis male 41 Gastric antrum d=5cm Ulcerative Adenocarcinoma, low differentiation LN metastasis female 73 Close cut edge 2.5 cm d=3cm Ulcerative Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis male 68 Cardia 5.5×5cm Ulcerative Adenocarcinoma, low differentiation Lesser curvature side LN metatasis male 35 Pylorus d=5cm Ulcerative Adenocarcinoma, low differentiation LN metastasis male 67 Gastric angle d=7cm Ulcerative Adenocarcinoma, low differentiation LN metastasis male 48 Gastric antrum 5×5cm Ulcerative Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis male 51 Gastric antrum 6×6cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 49 Lesser curvature side 9×9cm Protruded Adenocarcinoma, medium differentiation LN metastasis male 59 Lesser curvature side d=8cm Diffuse infiltrating Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis male 56 Lesser curvature side 6×5cm Ulcerative Adenocarcinoma, low differentiation LN metastasis male 72 Gastric antrum 6×6cm Ulcerative Adenocarcinoma, low differentiation Lesser curvature side LN metatasis male 52 Gastric antrum d=4cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 59 Gastric antrum d=4cm Ulcerative Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis male 53 Gastric antrum d=4cm Diffuse infiltrating Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis female 64 Gastric antrum 4×3.5cm Ulcerative Adenocarcinoma, low differentiation LN metastasis male 54 Gastric antrum 5×6cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis female 78 Gastric antrum 4.5×4cm Ulcerative Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis male 49 Gastric antrum 5×3cm Ulcerative Adenocarcinoma, low differentiation male 60 Gastric antrum 9×8cm Ulcerative Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis female 67 Lesser curvature side 10×9cm Ulcerative Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis male 50 Gastric antrum 4.5×4cm Ulcerative Adenocarcinoma, low differentiation LN metastasis male 63 Gastric cardiac 8×7cm Ulcerative Adenocarcinoma, low differentiation LN metastasis female 58 Near cut edge 1 cm and far cut edge 5 cmm d=5.5cm Ulcerative Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis male 72 Near cut edge 0.5m and far cut edge 2 cmm 9×5.5cm Ulcerative Adenocarcinoma, low differentiation LN metastasis male 63 Stomach fanterior wall d=6cm Ulcerative Adenocarcinoma, low differentiation Lesser curvature side LN metatasis female 73 Gastric antrum 8×7cm Ulcerative Adenocarcinoma, low differentiation LN metastasis male 63 Sbtomach, lymph nodes, esophagus 4×3cm Ulcerative Adenocarcinoma, medium differentiation Lesser curvature side LN metatasis male 73 Upper stomach body 5×3.5cm Fungating Adenocarcinoma, low differentiation Greater curvature side LN metastasis male 68 Stomach close cardia 8×12cm Ulcerative Adenocarcinoma, low differentiation Lesser curvature side LN metatasis male 75 Gastric pyloric antrum 5×4cm Ulcerative Adenocarcinoma, low differentiation LN metastasis male 55 Sbtomach 8×7cm Ulcerative Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis female 72 Greater curvature side 6×5cm Ulcerative Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis male 40 Sbtomach d=4cm Ulcerative Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis female 80 Gastric antrum 5×3.5cm Ulcerative Adenocarcinoma, medium differentiation No LN metastasis male 56 Gastric antrum 4×4cm Ulcerative Papillary Adenocarcinoma No LN metastasis male 62 Pylorus front wall 3.5×4.5(3) Ulcerative signet ring cell carcinoma, high differentiation Adenocarcinoma LN metastasis male 47 Gastric antrum 5.5×3×2cm Hybrid mucous cell carcinoma Greater and lesser curvature side LN metastasis male 78 Gastric antrum 5×6cm Ulcerative Tubular Adenocarcinoma, medium differentiation LN metastasis male 72 Gastric antrum 6×6cm Ulcerative Tubular Adenocarcinoma, medium differentiation LN metastasis male 60 Gastric antrum 5×4cm Ulcerative Mucous Adenocarcinoma LN metastasis male 54 Gastric antrum 4×5cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 57 Gastric antrum 8×8cm Ulcerative Mucous Adenocarcinoma LN metastasis male 78 Sbtomach 14×9cm Diffuse infiltrating Adenocarcinoma, low differentiation LN metastasis male 62 Gastric antrum 4×4cm Ulcerative Carcinoma, medium differentiation LN metastasis male 64 Gastric antrum 4×4cm Ulcerative Adenocarcinoma, high differentiation LN metastasis male 78 fundus of stomach d=3cm Ulcerative Adenocarcinoma, low differentiation Lesser curvature side LN metatasis female 82 Gastric antrum 6.5×5cm Ulcerative Adenocarcinoma, medium differentiation LN metastasis male 66 Gastric angle d=7cm Ulcerative Adenocarcinoma, low differentiation LN metastasis EBVaGC male 43 Gastric antrum, Gastric body 4×6cm Ulcerative Adenocarcinoma, low differentiation LN metastasis female 51 Cardia 8×4cm Ulcerative Adenocarcinoma, low differentiation LN metastasis female 62 Lesser curvature side 7×5cm Ulcerative Adenocarcinoma, low differentiation Greater curvature side LN metastasis female 59 Remnant stomach d=9cm Ulcerative Adenocarcinoma, low differentiation Lesser curvature side LN metatasis male 26 Gastric antrum d=4cm Ulcerative Adenocarcinoma, low differentiation LN metastasis male 57 Gastric body 4×4.5cm Ulcerative Adenocarcinoma, low differentiation Lesser curvature side LN metatasis male 43 Remnant stomach 4cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 75 Gastric antrum 8×4cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 44 Gastric antrum d=7cm Ulcerative Adenocarcinoma, low differentiation Lesser curvature side LN metatasis male 52 Cardia and fundus 10×9cm Ulcerative Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis female 42 Gastric body d=3.5cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 69 Gastric antrum 7×4cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 47 Lesser curvature side 4×3cm Diffuse infiltrating Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis male 44 Gastric antrum 8×5cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 60 Pylorus front wall 9×10cm Ulcerative Adenocarcinoma, low differentiation LN metastasis male 41 Remnant stomach 13×12cm Ulcerative Adenocarcinoma, medium differentiation LN metastasis male 77 Lesser curvature side 14×12cm Ulcerative infiltrating Adenocarcinoma, low differentiation LN metastasis male 61 Lesser curvature side 4.5×2×2 Ulcerative Adenocarcinoma, low differentiation LN metastasis male 62 Lesser curvature side 4.2×3×1 Ulcerative Adenocarcinoma No LN metastasis male 55 Lesser curvature side 4×5×1.2 Signet ring cell carcinoma LN metastasis male 55 Gastric antrum 8×7.5cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 52 Gastric body 10×8.5 Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 55 Lesser curvature side 7×5cm Ulcerative Adenocarcinoma, low differentiation LN metastasis male 67 Gastric body d=6cm Ulcerative Adenocarcinoma, low differentiation LN metastasis male 70 Gastric antrum 5×5cm Adenocarcinoma, low differentiation LN metastasis male 63 Cardia 5.5×2.5cm Adenocarcinoma, low differentiation No LN metastasis male 40 Lesser curvature side 4×3 Adenocarcinoma, low differentiation LN metastasis male 69 Lesser curvature side 9.5×7cm Ulcerative Adenocarcinoma, medium-low differentiation Greater and lesser curvature side LN metastasis male 52 Lesser curvature side 2.6×3.8cm Adenocarcinoma, medium differentiation LN metastasis female 43 Lesser curvature side S 5.5×1cm Adenocarcinoma, medium-low differentiation LN metastasis female 44 Gastric body S 5.5×1.0cm Ulcerative Adenocarcinoma, low differentiation LN metastasis male 51 Cardia S 7×1.2cm Diffuse infiltrating Adenocarcinoma, low differentiation LN metastasis female 69 Gastric body S 3.5×2.0㎝ Adenocarcinoma, low differentiation No LN metastasis male 50 Gastric body S 7×5.5㎝ Adenocarcinoma, low differentiation Cardiac branch into the esophagus male 48 Gastric body S 7.5×5.5㎝ Adenocarcinoma, low differentiation Lesser curvature side LN metatasis male 58 Gastric body S 6.5×6㎝ Adenocarcinoma, low differentiation Greater curvature side LN metastasis male 42 Gastric body S 7×5㎝ Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis male 55 Gastric antrum 9×2-4.5 Adenocarcinoma, low differentiation LN metastasis male 37 Gastric antrum 6×3.8×3.2 Infiltrating Adenocarcinoma, low differentiation LN metastasis male 57 Gastric antrum 10.5×10×2 Ulcerative Mucous Adenocarcinoma LN metastasis female 54 Gastric antrum 6.5×6×1.5 Ulcerative Adenocarcinoma, low differentiation LN metastasis male 61 Gastric antrum 6.6×4×2.5cm Adenocarcinoma, low differentiation LN metastasis male 63 Lesser curvature side 5.5×2.5cm Adenocarcinoma, low differentiation No LN metastasis male 44 Lesser curvature side 6.5×5cm Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis male 70 Lesser curvature side 10×9cm Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis male 48 Lesser curvature side 9.5×6cm Ulcerative Adenocarcinoma, low differentiation Lesser curvature side LN metatasis male 78 Lesser curvature side 6×5cm Ulcerative Adenocarcinoma, low differentiation Lesser curvature side LN metatasis male 56 Remnant stomach 9×8cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 64 Gastric antrum 5×4cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 54 Gastric antrum 9×8cm Ulcerative Adenocarcinoma, low differentiation Lesser curvature side LN metatasis male 55 Cardia and fundus 6×6cm Ulcerative Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis female 48 Gastric body 11×7cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 37 Gastric antrum 4.5×3cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 37 Gastric antrum 7×6cm Ulcerative Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis male 78 Gastric antrum 6.5×6cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis female 61 Lesser curvature side 5.5×4cm Ulcerative Adenocarcinoma, low differentiation LN metastasis female 63 Lesser curvature side 5.5×5cm Ulcerative Mucous Adenocarcinoma LN metastasis male 56 Gastric body d=3cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis female 43 Gastric antrum d=4cm Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis male 46 Gastric antrum 4.5×3.5cm Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis male 59 Gastric antrum 5×3cm Ulcerative Adenocarcinoma LN metastasis male 70 Cardia d=2cm Signet ring cell carcinoma LN metastasis male 64 Lesser curvature side d=2.5cm Ulcerative Adenocarcinoma, low differentiation No LN metastasis male 42 Lesser curvature side 6×5cm Ulcerative Adenocarcinoma, low differentiation Greater and lesser curvature side LN metastasis Table S2. Detail information for EBVaGC/EBVnGC patients and healthy controls
Figure 3 个
Table 7 个
