-
Ahne W, Bjorklund HV, Essbauer S, Fijan N, Kurath G, Winton JR, 2002: Spring viremia of carp (svc)[J]. Dis Aquat Organ, 52, 261-272. doi: 10.3354/dao052261
-
Alvarez-Pellitero P, 2008: Fish immunity and parasite infections: from innate immunity to immunoprophylactic prospects[J]. Vet Immunol Immunopathol, 126, 171-198. doi: 10.1016/j.vetimm.2008.07.013
-
Barr SD, Smiley JR, Bushman FD, 2008: The interferon response inhibits hiv particle production by induction of trim22[J]. PLoS Pathog, 4, e1000007-. doi: 10.1371/journal.ppat.1000007
-
Bell JL, Malyukova A, Holien JK, Koach J, Parker MW, Kavallaris M, Marshall GM, Cheung BB, 2012: Trim16 acts as an e3 ubiquitin ligase and can heterodimerize with other trim family members[J]. PLoS ONE, 7, e37470-. doi: 10.1371/journal.pone.0037470
-
Beutler B, 2004: Innate immunity: an overview[J]. Mol Immunol, 40, 845-859. doi: 10.1016/j.molimm.2003.10.005
-
Borden KL, 1998: Ring fingers and b-boxes: zinc-binding proteinprotein interaction domains[J]. Cell Biol, 76, 351-358.
-
Campbell EM, Weingart J, Sette P, Opp S, Sastri J, O'Connor SK, Talley S, Diazgriffero F, Hirsch V, Bouamr F, 2015: Trim5amediated ubiquitin chain conjugation is required for inhibition of hiv-1 reverse transcription and capsid destabilization[J]. J Virol, 90, 1849-1857. doi: 10.1128/JVI.01948-15
-
Chang TH, 2008: Trim family proteins and their emerging roles in innate immunity[J]. Nat Rev Immunol, 8, 849-860. doi: 10.1038/nri2413
-
Chang HW, Wang WD, Chiu CC, Chen CH, Wang YS, Chen ZY, Liu W, Tai MH, Wen ZH, Wu CY, 2017: Ftr82 is critical for vascular patterning during zebrafish development[J]. J Mol Sci, 18, 156-. doi: 10.3390/ijms18010156
-
Chen B, Huo S, Liu W, Wang F, Lu Y, Xu Z, Liu X, 2019: Fishspecific finTRIM FTR36 triggers IFN pathway and mediates inhibition of viral replication[J]. Fish Shellfish Immunol, 84, 876-884. doi: 10.1016/j.fsi.2018.10.051
-
Cui Z, Liu Y, Luan W, Li Q, Wu D, Wang S, 2010: Molecular cloning and characterization of a heat shock protein 70 gene in swimming crab (portunus trituberculatus)[J]. Fish Shellfish Immunol, 28, 56-64. doi: 10.1016/j.fsi.2009.09.018
-
Dawidziak DM, Sanchez JG, Wagner JM, Ganser-Pornillos BK, Pornillos O, 2017: Structure and catalytic activation of the trim23 ring e3 ubiquitin ligase[J]. Proteins, 85, 1957-1961. doi: 10.1002/prot.v85.10
-
Ebner P, Versteeg GA, Ikeda F, 2017: Ubiquitin enzymes in the regulation of immune responses[J]. Crit Rev Biochem Mol Biol, 52, 425-460. doi: 10.1080/10409238.2017.1325829
-
Eldin P, Papon L, Oteiza A, Brocchi E, Lawson TG, Mechti N, 2009: Trim22 e3 ubiquitin ligase activity is required to mediate antiviral activity against encephalomyocarditis virus[J]. J Gen Virol, 90, 536-545. doi: 10.1099/vir.0.006288-0
-
Esposito D, Koliopoulos MG, Rittinger K, 2017: Structural determinants of trim protein function[J]. Biochem Soc Trans, 45, 183-191. doi: 10.1042/BST20160325
-
Fan W, Wu M, Qian S, Zhou Y, Chen H, Li X, Qian P, 2016: Trim52 inhibits japanese encephalitis virus replication by degrading the viral ns2a[J]. Sci Rep, 6, 33698-. doi: 10.1038/srep33698
-
Fearon DT, Locksley RM, 1996: The instructive role of innate immunity in the acquired immune response[J]. Science, 272, 50-53. doi: 10.1126/science.272.5258.50
-
Germain RN, 2004: An innately interesting decade of research in immunology[J]. Nat Med, 10, 1307-1320. doi: 10.1038/nm1159
-
Gong XY, Zhang QM, Gui JF, Zhang YB, 2018: SVCV infection triggers fish IFN response through RLR signaling pathway[J]. Fish Shellfish Immunol, 86, 1058-1063.
-
Huang Y, Yu Y, Yang Y, Yang M, Zhou L, Huang X, Qin Q, 2016a: Fish trim8 exerts antiviral roles through regulation of the proinflammatory factors and interferon signaling[J]. Fish Shellfish Immunol, 54, 435-444. doi: 10.1016/j.fsi.2016.04.138
-
Huang Y, Yang M, Yu Y, Yang Y, Zhou L, Huang X, Qin Q, 2016b: Grouper trim13 exerts negative regulation of antiviral immune response against nodavirus[J]. Fish Shellfish Immunol, 55, 106-115. doi: 10.1016/j.fsi.2016.05.029
-
Kumar S, Stecher G, Tamura K, 2016: Mega7: molecular evolutionary genetics analysis version 7.0 for bigger datasets[J]. Mol Biol Evol, 33, 1870-1874. doi: 10.1093/molbev/msw054
-
Langevin C, Aleksejeva E, Houel A, Briolat V, Torhy C, Lunazzi A, Levraud JP, Boudinot P, 2017: Ftr83, a member of the large fishspecific fintrim family, triggers ifn pathway and counters viral infection[J]. Front Immunol, 8, 617-. doi: 10.3389/fimmu.2017.00617
-
Letunic I, Bork P, 2017: 20 years of the smart protein domain annotation resource[J]. Nucleic Acids Res, 46, D493-D496.
-
Li Y, Wu H, Wu W, Zhuo W, Liu W, Zhang Y, Cheng M, Chen YG, Gao N, Yu H, 2014: Structural insights into the trim family of ubiquitin e3 ligases[J]. Cell Res, 24, 762-765. doi: 10.1038/cr.2014.46
-
Liu B, Li NL, Wang J, Shi PY, Wang T, Miller MA, Li K, 2014: Overlapping and distinct molecular determinants dictating the antiviral activities of trim56 against flaviviruses and coronavirus[J]. J Virol, 88, 13821-13835. doi: 10.1128/JVI.02505-14
-
Liu L, Zhu B, Wu S, Lin L, Liu G, Zhou Y, Wang W, Asim M, Yuan J, Li L, 2015: Spring viraemia of carp virus induces autophagy for necessary viral replication[J]. Cell Microbiol, 17, 595-605. doi: 10.1111/cmi.2015.17.issue-4
-
Livak KJ, Schmittgen TD, 2001: Analysis of relative gene expression data using real-time quantitative pcr and the 2(-delta delta c(t)) method[J]. Methods, 25, 402-408. doi: 10.1006/meth.2001.1262
-
Luo K, Li Y, Xia L, Hu W, Gao W, Guo L, Tian G, Qi Z, Yuan H, Qiaoqing X, 2017: Analysis of the expression patterns of the novel large multigene trim gene family (fintrim) in zebrafish[J]. Fish Shellfish Immunol, 66, 224-230. doi: 10.1016/j.fsi.2017.04.024
-
Matthew S, Owens CM, Perron MJ, Michael K, Patrick A, Joseph S, 2004: The cytoplasmic body component trim5alpha restricts hiv-1 infection in old world monkeys[J]. Nature, 427, 848-853. doi: 10.1038/nature02343
-
Meroni G, Diez-Roux G, 2005: Trim/rbcc, a novel class of 'single protein ring finger' e3 ubiquitin ligases[J]. BioEssays, 27, 1147-1157. doi: 10.1002/(ISSN)1521-1878
-
Novoa B, Romero A, Mulero V, Rodríguez I, Fernández I, Figueras A, 2006: Zebrafish (danio rerio) as a model for the study of vaccination against viral haemorrhagic septicemia virus (vhsv)[J]. Vaccine, 24, 5806-5816. doi: 10.1016/j.vaccine.2006.05.015
-
Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE, 2004: Ucsf chimera—a visualization system for exploratory research and analysis[J]. J Comput Chem, 25, 1605-1612. doi: 10.1002/(ISSN)1096-987X
-
Pietro AD, Kajasterudnitski A, Oteiza A, Nicora L, Towers GJ, Mechti N, Vicenzi E, 2013: Trim22 inhibits influenza a virus infection by targeting the viral nucleoprotein for degradation[J]. J Virol, 87, 4523-4533. doi: 10.1128/JVI.02548-12
-
Pizzi M, 1950: Sampling variation of the fifty per cent end-point, determined by the reedmuench (behrens) method[J]. Hum Biol, 22, 151-190.
-
Rajsbaum R, García-Sastre A, Versteeg GA, 2014: Trimmunity: the roles of the trim e3-ubiquitin ligase family in innate antiviral immunity[J]. J Mol Biol, 426, 1265-1284. doi: 10.1016/j.jmb.2013.12.005
-
Reddy BA, Etkin LD, 1991: A unique bipartite cysteine-histidine motif defines a subfamily of potential zinc-finger proteins[J]. Nucleic Acids Res, 19, 6330-. doi: 10.1093/nar/19.22.6330
-
Reddy BA, Etkin LD, Freemont PS, 1992: A novel zinc finger coiledcoil domain in a family of nuclear proteins[J]. Trends Biochem Sci, 17, 344-345. doi: 10.1016/0968-0004(92)90308-V
-
Reymond A, Meroni G, Fantozzi A, Merla G, Cairo S, Luzi L, Riganelli D, Zanaria E, Messali S, Cainarca S, 2001: The tripartite motif family identifies cell compartments[J]. EMBO J, 20, 2140-2151. doi: 10.1093/emboj/20.9.2140
-
Sanchez JG, Okreglicka K, Chandrasekaran V, Welker JM, Sundquist WI, Pornillos O, 2014: The tripartite motif coiled-coil is an elongated antiparallel hairpin dimer[J]. Proc Natl Acad Sci U S A, 111, 2494-2499. doi: 10.1073/pnas.1318962111
-
Sanders GE, Batts WN, Winton JR, 2003: Susceptibility of zebrafish (danio rerio) to a model pathogen, spring viremia of carp virus[J]. Comp Med, 53, 514-521.
-
Smyth MJ, Godfrey DI, Trapani JA, 2001: A fresh look at tumor immunosurveillance and immunotherapy[J]. Nat Immunol, 2, 293-299. doi: 10.1038/86297
-
Thompson JD, Higgins DG, Gibson TJ, 1994: Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice[J]. Nucleic Acids Res, 22, 4673-4680. doi: 10.1093/nar/22.22.4673
-
Uchil PD, Quinlan BD, Chan WT, Luna JM, Mothes W, 2008: Trim e3 ligases interfere with early and late stages of the retroviral life cycle[J]. PLoS Pathog, 4, e16-. doi: 10.1371/journal.ppat.0040016
-
Uchil PD, Hinz A, Siegel S, Coenen-Stass A, Pertel T, Luban J, Mothes W, 2013: TRIM protein-mediated regulation of inflammatory and innate immune signaling and its association with antiretroviral activity[J]. J Virol, 87, 257-272. doi: 10.1128/JVI.01804-12
-
Van der Aa LM, Levraud JP, Yahmi M, Lauret E, Briolat V, Herbomel P, Benmansour A, Boudinot P, 2009: A large new subset of TRIM genes highly diversified by duplication and positive selection in teleost fish[J]. BMC Biol, 7, 7-. doi: 10.1186/1741-7007-7-7
-
Van der Aa LM, Jouneau L, Laplantine E, Bouchez O, Van KL, Boudinot P, 2012: FinTRIMs, fish virus-inducible proteins with E3 ubiquitin ligase activity[J]. Dev Comp Immunol, 36, 433-441. doi: 10.1016/j.dci.2011.08.010
-
Versteeg GA, Benke S, Garcíasastre A, Rajsbaum R, 2014: Intrimsic immunity: positive and negative regulation of immune signaling by tripartite motif proteins[J]. Cytokine Growth Factor Rev, 25, 563-576. doi: 10.1016/j.cytogfr.2014.08.001
-
Wang W, Huang Y, Yu Y, Yang Y, Xu M, Chen X, Ni S, Qin Q, Huang X, 2016a: Fish trim39 regulates cell cycle progression and exerts its antiviral function against iridovirus and nodavirus[J]. Fish Shellfish Immunol, 50, 1-10. doi: 10.1016/j.fsi.2016.01.016
-
Wang Y, Li Z, Lu Y, Hu G, Li L, Zeng L, Yong Z, Liu X, 2016b: Molecular characterization, tissue distribution and expression, and potential antiviral effects of trim32 in the common carp (cyprinus carpio)[J]. Int J Mol Sci, 17, E1693-. doi: 10.3390/ijms17101693
-
Wang Y, Zhang H, Lu Y, Wang F, Liu L, Liu J, Liu X, 2017: Comparative transcriptome analysis of zebrafish (Danio rerio) brain and spleen infected with spring viremia of carp virus (SVCV)[J]. Fish Shellfish Immunol, 69, 35-45. doi: 10.1016/j.fsi.2017.07.055
-
Waterhouse A, Bertoni M, Bienert S, Studer G, Tauriello G, Gumienny R, Heer FT, de Beer TAP, Rempfer C, Bordoli L, 2018: Swiss-model: homology modelling of protein structures and complexes[J]. Nucleic Acids Res, 46, W296-W303. doi: 10.1093/nar/gky427
-
Weinert C, Morger D, Djekic A, Grütter MG, Mittl PRE, 2015: Crystal structure of trim20 c-terminal coiled-coil/b30.2 fragment: implications for the recognition of higher order oligomers[J]. Sci Rep, 5, 10819-. doi: 10.1038/srep10819
-
Yang Y, Huang Y, Yu Y, Yang M, Zhou S, Qin Q, Huang X, 2016a: Ring domain is essential for the antiviral activity of trim25 from orange spotted grouper[J]. Fish Shellfish Immunol, 55, 304-314. doi: 10.1016/j.fsi.2016.06.005
-
Yang Y, Huang Y, Yu Y, Zhou S, Wang S, Yang M, Qin Q, Huang X, 2016b: Negative regulation of the innate antiviral immune response by trim62 from orange spotted grouper[J]. Fish Shellfish Immunol, 57, 68-78. doi: 10.1016/j.fsi.2016.08.035
-
Ye Y, Rape M, 2009: Building ubiquitin chains: E2 enzymes at work[J]. Nat Rev Mol Cell Biol, 10, 755-764. doi: 10.1038/nrm2780
-
Ye J, Coulouris G, Zaretskaya I, Cutcutache I, Rozen S, Madden TL, 2012: Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction[J]. BMC Bioinform, 13, 134-. doi: 10.1186/1471-2105-13-134
-
Yu Y, Huang X, Zhang J, Liu J, Yin H, Ying Y, Jia C, Huang Y, Qin Q, 2016: Fish trim16l exerts negative regulation on antiviral immune response against grouper iridoviruses[J]. Fish Shellfish Immunol, 59, 256-267. doi: 10.1016/j.fsi.2016.10.044
-
Yu Y, Huang X, Liu J, Zhang J, Yin H, Ying Y, Huang Y, Qin Q, 2017: Fish trim32 functions as a critical antiviral molecule against iridovirus and nodavirus[J]. Fish Shellfish Immunol, 60, 33-43. doi: 10.1016/j.fsi.2016.11.036
-
Zhang S, Guo JT, Wu JZ, Yang G, 2013: Identification and characterization of multiple trim proteins that inhibit hepatitis b virus transcription[J]. PLoS ONE, 8, e70001-. doi: 10.1371/journal.pone.0070001
-
Zhou Z, Jia X, Xue Q, Dou Z, Ma Y, Zhao Z, Jiang Z, He B, Jin Q, Wang J, 2014: Trim14 is a mitochondrial adaptor that facilitates retinoic acid-inducible gene-i-like receptor-mediated innate immune response[J]. Proc Natl Acad Sci U S A, 111, E245-E254. doi: 10.1073/pnas.1316941111