Citation: Jie Zou, Yuxin Lin, Chunyan Wu, Yao Ji, Xuankai Zhao, Zhan Xu, Jingfei Gong, Zhiyuan Shi, Tianyang Luo, Xiaoling Xie, Yanan Jiang, Qi Tian, Shuqi Zhang, Yanxi Ji, Yuan Li, Zhenyu He, Shuchun Zhang, Liu Cao, Chun-Mei Li, Junyu Wu, Deyin Guo. The antiviral role of TRIM25 in mammalian embryonic stem cells .VIROLOGICA SINICA, 2026, 41(4) : 820-831.  http://dx.doi.org/10.1016/j.virs.2026.07.011

The antiviral role of TRIM25 in mammalian embryonic stem cells

  • Mammalian embryonic stem cells (ESCs), despite lacking functional interferon (IFN) signaling, are remarkably resistant to viral infection. However, the mechanistic basis of their antiviral defenses remains incompletely characterized. In this study, we investigated the antiviral functional role and molecular mechanism of tripartite motif-containing protein 25 (TRIM25), a well-known key driver of IFN-dependent innate immunity, in IFN-deficient mouse ESCs (mESCs). TRIM25 exhibited a broad spectrum of antiviral activity in mESCs. RNAi depletion or CRISPR-mediated knockout of TRIM25 markedly enhanced the replication and propagation of both encephalomyocarditis virus (EMCV) and vesicular stomatitis virus (VSV). Mechanistically, the antiviral activity of TRIM25 in mESCs is independent of both IFN production and constitutive ISG expression. In virus-infected mESCs, TRIM25 translocated from the nucleus to the cytoplasm and directly bound viral RNA, where it formed cytoplasmic condensates with GTPase-activating protein-binding protein 1 (G3BP1) that colocalized with dsRNA foci. Genetic perturbation of G3BP1 similarly compromised the antiviral defenses of mESCs, revealing an essential synergism between TRIM25 and stress granule components in restricting viral replication. Our study identifies TRIM25 as a pivotal RNA-sensing effector in ESCs, delineating a previously unrecognized IFN-independent axis of intrinsic immunity that bridges viral RNA surveillance with stress granule-mediated suppression, thereby expanding the paradigm of pluripotent cell-autonomous antiviral strategies.

  • 加载中
  • 10.1016j.virs.2026.07.011-ESM.docx
    1. Alvarez, L., Haubrich, K., Iselin, L., Gillioz, L., Ruscica, V., Lapouge, K., Augsten, S., Huppertz, I., Choudhury, N.R., Simon, B., et al., 2024. The molecular dissection of TRIM25's RNA-binding mechanism provides key insights into its antiviral activity. Nat Commun, 15, 8485.

    2. Beachboard, D.C., Horner, S.M., 2016. Innate immune evasion strategies of DNA and RNA viruses. Curr Opin Microbiol, 32, 113-119.

    3. Bekisz, J., Baron, S., Balinsky, C., Morrow, A., Zoon, K.C., 2010. Antiproliferative Properties of Type I and Type II Interferon. Pharmaceuticals (Basel, Switzerland), 3, 994-1015.

    4. Castello, A., Kamel, W., 2025. Nuclear RNA-binding proteins meet cytoplasmic viruses. RNA, 31, 444-451.

    5. Chen, G.Y., Hwang, S.M., Su, H.J., Kuo, C.Y., Luo, W.Y., Lo, K.W., Huang, C.C., Chen, C.L., Yu, S.H., Hu, Y.C., 2012. Defective antiviral responses of induced pluripotent stem cells to baculoviral vector transduction. J Virol, 86, 8041-8049.

    6. Chen, L.L., Yang, L., Carmichael, G.G., 2010. Molecular basis for an attenuated cytoplasmic dsRNA response in human embryonic stem cells. Cell Cycle, 9, 3552-3564.

    7. Choudhury, N.R., Heikel, G., Trubitsyna, M., Kubik, P., Nowak, J.S., Webb, S., Granneman, S., Spanos, C., Rappsilber, J., Castello, A., Michlewski, G., 2017. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. BMC Biol, 15, 105.

    8. Choudhury, N.R., Trus, I., Heikel, G., Wolczyk, M., Szymanski, J., Bolembach, A., Dos Santos Pinto, R.M., Smith, N., Trubitsyna, M., Gaunt, E., Digard, P., Michlewski, G., 2022. TRIM25 inhibits influenza A virus infection, destabilizes viral mRNA, but is redundant for activating the RIG-I pathway. Nucleic Acids Res, 50, 7097-7114.

    9. Dong, H., Pan, Z., Jiao, P., Ye, F., Peng, Q., Yu, Y., Lai, X., Li, H., Guan, Z., Deng, J., Shen, T., Tan, W., Shi, Y., Ding, Q., Luo, J., Li, T., Zhuang, H., Xiang, K., 2025. Vesicle-associated membrane protein 5 is an intrinsic defense factor for embryonic stem cells against coronaviruses. Nat Commun., 16, 6241.

    10. Gack, M.U., Shin, Y.C., Joo, C.H., Urano, T., Liang, C., Sun, L., Takeuchi, O., Akira, S., Chen, Z., Inoue, S., Jung, J.U., 2007. TRIM25 RING-finger E3 ubiquitin ligase is essential for RIG-I-mediated antiviral activity. Nature, 446, 916-920.

    11. Garcia-Sastre, A., Biron, C.A., 2006. Type 1 interferons and the virus-host relationship: a lesson in detente. Science, 312, 879-882.

    12. Kamel, W., Ruscica, V., Embarc-Buh, A., de Laurent, Z.R., Garcia-Moreno, M., Demyanenko, Y., Orton, R.J., Noerenberg, M., Madhusudhan, M., Iselin, L., Jarvelin, A.I., Hannan, M., Kitano, E., Moore, S., Merits, A., Davis, I., Mohammed, S., Castello, A., 2024. Alphavirus infection triggers selective cytoplasmic translocation of nuclear RBPs with moonlighting antiviral roles. Mol Cell, 84, 4896-4911.

    13. Kim, M., Pyo, Y., Hyun, S.I., Jeong, M., Choi, Y., Kim, V.N., 2025. Exogenous RNA surveillance by proton-sensing TRIM25. Science, 388, eads4539.

    14. Kwon, S.C., Yi, H., Eichelbaum, K., Fohr, S., Fischer, B., You, K.T., Castello, A., Krijgsveld, J., Hentze, M.W., Kim, V.N., 2013. The RNA-binding protein repertoire of embryonic stem cells. Nature Structural & Molecular Biology, 20, 1122-1130.

    15. Maillard, P.V., Ciaudo, C., Marchais, A., Li, Y., Jay, F., Ding, S.W., Voinnet, O., 2013. Antiviral RNA interference in mammalian cells. Science, 342, 235-238.

    16. Meyerson, N.R., Zhou, L., Guo, Y.R., Zhao, C., Tao, Y.J., Krug, R.M., Sawyer, S.L., 2017. Nuclear TRIM25 Specifically Targets Influenza Virus Ribonucleoproteins to Block the Onset of RNA Chain Elongation. Cell Host Microbe, 22, 627-638 e627.

    17. Sanchez, J.G., Sparrer, K.M.J., Chiang, C., Reis, R.A., Chiang, J.J., Zurenski, M.A., Wan, Y., Gack, M.U., Pornillos, O., 2018. TRIM25 Binds RNA to Modulate Cellular Anti-viral Defense. J Mol Biol, 430, 5280-5293.

    18. Sanz, M.A., Garcia-Moreno, M., Carrasco, L., 2015. Inhibition of host protein synthesis by Sindbis virus: correlation with viral RNA replication and release of nuclear proteins to the cytoplasm. Cell Microbiol, 17, 520-541.

    19. Shang, Z., Zhang, S., Wang, J., Zhou, L., Zhang, X., Billadeau, D.D., Yang, P., Zhang, L., Zhou, F., Bai, P., Jia, D., 2024. TRIM25 predominately associates with anti-viral stress granules. Nat Commun, 15, 4127.

    20. Tapescu, I., Taschuk, F., Pokharel, S.M., Zginnyk, O., Ferretti, M., Bailer, P.F., Whig, K., Madden, E.A., Heise, M.T., Schultz, D.C., Cherry, S., 2023. The RNA helicase DDX39A binds a conserved structure in chikungunya virus RNA to control infection. Mol Cell, 83, 4174-4189.

    21. Wang, R., Wang, J., Paul, A.M., Acharya, D., Bai, F., Huang, F., Guo, Y.-L., 2013. Mouse Embryonic Stem Cells Are Deficient in Type I Interferon Expression in Response to Viral Infections and Double-stranded RNA∗. Journal of Biological Chemistry, 288, 15926-15936.

    22. Wu, J., Wu, C., Xing, F., Cao, L., Zeng, W., Guo, L., Li, P., Zhong, Y., Jiang, H., Luo, M., Shi, G., Bu, L., Ji, Y., Hou, P., Peng, H., Huang, J., Li, C., Guo, D., 2021. Endogenous reverse transcriptase and RNase H-mediated antiviral mechanism in embryonic stem cells. Cell Res, 31, 998-1010.

    23. Wu, X., Thi, V.L.D., Huang, Y., Billerbeck, E., Saha, D., Hoffmann, H.-H., Wang, Y., Silva, L.a.V., Sarbanes, S.L., Sun, T., Andrus, L., Yu, Y., Quirk, C., Li, M.M.H., Macdonald, M.R., Schneider, W.M., An, X., Rosenberg, B.R., Rice, C.M., 2017. Intrinsic Immunity Shapes Viral Resistance of Stem Cells. Cell, 172, 423-438.e425.

    24. Yang, J., Dan, J., Zhao, N., Liu, L., Wang, H., Liu, Q., Wang, L., Li, J., Wu, Y., Chen, F., et al., 2024. Zscan4 mediates ubiquitination and degradation of the corepressor complex to promote chromatin accessibility in 2C-like cells. Proceedings of the National Academy of Sciences, 121, e2407490121.

    25. Yang, P., Mathieu, C., Kolaitis, R.M., Zhang, P., Messing, J., Yurtsever, U., Yang, Z., Wu, J., Li, Y., Pan, Q., Yu, J., Martin, E.W., Mittag, T., Kim, H.J., Taylor, J.P., 2020. G3BP1 Is a Tunable Switch that Triggers Phase Separation to Assemble Stress Granules. Cell, 181, 325-345 e328.

    26. Yoo, J.-S., Takahasi, K., Ng, C.S., Ouda, R., Onomoto, K., Yoneyama, M., Lai, J.C., Lattmann, S., Nagamine, Y., Matsui, T., Iwabuchi, K., Kato, H., Fujita, T., 2014. DHX36 Enhances RIG-I Signaling by Facilitating PKR-Mediated Antiviral Stress Granule Formation. PLOS Pathogens, 10, e1004012.

    27. Yuan, Y., Fang, A., Wang, Z., Tian, B., Zhang, Y., Sui, B., Luo, Z., Li, Y., Zhou, M., Chen, H., Fu, Z.F., Zhao, L., 2022. Trim25 restricts rabies virus replication by destabilizing phosphoprotein. Cell Insight, 1, 100057.

    28. Zhao, B., Zhang, W., Cun, Y., Li, J., Liu, Y., Gao, J., Zhu, H., Zhou, H., Zhang, R., Zheng, P., 2018. Mouse embryonic stem cells have increased capacity for replication fork restart driven by the specific Filia-Floped protein complex. Cell research, 28, 69-89.

  • 加载中

Figures(1)

Article Metrics

Article views(10) PDF downloads(0) Cited by()

Related
Proportional views

    The antiviral role of TRIM25 in mammalian embryonic stem cells

      Corresponding author: Liu Cao, caoliu@mail.sysu.edu.cn
      Corresponding author: Chun-Mei Li, lichm8@mail.sysu.edu.cn
      Corresponding author: Junyu Wu, wujy68@mail.sysu.edu.cn
      Corresponding author: Deyin Guo, guo_deyin@gzlab.ac.cn
    • a. MOE Key Laboratory of Tropical Disease Control, Zhongshan School of Medicine, Sun Yat-sen University Shenzhen Campus, Shenzhen 518197, China;
    • b. Guangzhou National Laboratory, Guangzhou International Bio-Island, Guangzhou 510320, China;
    • c. State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Health, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou 510182, China

    Abstract: Mammalian embryonic stem cells (ESCs), despite lacking functional interferon (IFN) signaling, are remarkably resistant to viral infection. However, the mechanistic basis of their antiviral defenses remains incompletely characterized. In this study, we investigated the antiviral functional role and molecular mechanism of tripartite motif-containing protein 25 (TRIM25), a well-known key driver of IFN-dependent innate immunity, in IFN-deficient mouse ESCs (mESCs). TRIM25 exhibited a broad spectrum of antiviral activity in mESCs. RNAi depletion or CRISPR-mediated knockout of TRIM25 markedly enhanced the replication and propagation of both encephalomyocarditis virus (EMCV) and vesicular stomatitis virus (VSV). Mechanistically, the antiviral activity of TRIM25 in mESCs is independent of both IFN production and constitutive ISG expression. In virus-infected mESCs, TRIM25 translocated from the nucleus to the cytoplasm and directly bound viral RNA, where it formed cytoplasmic condensates with GTPase-activating protein-binding protein 1 (G3BP1) that colocalized with dsRNA foci. Genetic perturbation of G3BP1 similarly compromised the antiviral defenses of mESCs, revealing an essential synergism between TRIM25 and stress granule components in restricting viral replication. Our study identifies TRIM25 as a pivotal RNA-sensing effector in ESCs, delineating a previously unrecognized IFN-independent axis of intrinsic immunity that bridges viral RNA surveillance with stress granule-mediated suppression, thereby expanding the paradigm of pluripotent cell-autonomous antiviral strategies.

    Figure (1)  Reference (28) Relative (20)

    目录

    /

    DownLoad:  Full-Size Img  PowerPoint
    Return
    Return