Citation: Hailiang Sun, Jian-Li Xue, Elizabeth Bailey, Yifei Xu, Guoliang Hu, John Baroch, Yi Zhang, Lanny Pace, Thomas J DeLiberto, Xiu-Feng Wan. A quantitative RT-PCR assay for rapid detection of Eurasian lineage H10 subtype influenza A virus .VIROLOGICA SINICA, 2016, 31(5) : 444-447.  http://dx.doi.org/10.1007/s12250-016-3826-1

A quantitative RT-PCR assay for rapid detection of Eurasian lineage H10 subtype influenza A virus

  • Corresponding author: Xiu-Feng Wan, wan@cvm.msstate.edu, ORCID: 0000-0003-2629-9234
  • Published Date: 18 September 2016
    Available online: 01 October 2016
  • Quantitative RT-PCR (qRT-PCR) has been commonly used for IAV detection in influenza surveillance and disease diagnosis because of its high sensitivity, specificity, and high throughput. A number of HA subtype specific qRT-PCR methods have been developed, including H5, H7, and H9 (Monne et al., 2008). However, there is still lack of a specific qRT-PCR method for detecting the emerging H10N8 IAVs. In this study, a Eurasian-lineage H10 specific qRT-PCR is developed and validated.

  • 加载中
  • 10.1007s12250-016-3826-1.pdf
    1. Afonina IA, Reed MW, Lusby E, et al. 2002. Biotechniques, 32: 940-944, 946-949.

    2. Ben Shabat M, Meir R, Haddas R, et al. 2010. J Virol Methods, 168:72-77.
        doi: 10.1016/j.jviromet.2010.04.019

    3. Chen HY, Yuan H, Gao RB, et al. 2014. Lancet, 383: 714-721.
        doi: 10.1016/S0140-6736(14)60111-2

    4. Edgar RC. 2004. Nucleic Acids Res, 32: 1792-1797.
        doi: 10.1093/nar/gkh340

    5. Fouchier RA, Bestebroer TM, Herfst S, et al. 2000. J Clin Microbiol, 38:4096-4101.

    6. Fries AC, Nolting JM, Bowman AS, et al. 2014. Influenza Other Respir Viruses, 8: 493-498.
        doi: 10.1111/irv.2014.8.issue-4

    7. Ip HS, Torchetti MK, Crespo R, et al. 2015. Emerg Infect Dis, 21:886-890.
        doi: 10.3201/eid2105.142020

    8. Lam TT, Ip HS, Ghedin E, et al. 2012. Ecol Lett, 15: 24-33.
        doi: 10.1111/ele.2011.15.issue-1

    9. Lew AE, Bock RE, Molloy JB, et al. 2004. J Virol Methods, 115:167-175.
        doi: 10.1016/j.jviromet.2003.09.029

    10. Monne I, Ormelli S, Salviato A, et al. 2008. J Clin Microbiol, 46:1769-1773.
        doi: 10.1128/JCM.02204-07

    11. Shinde V, Bridges CB, Uyeki TM, et al 2009. N Engl J Med, 360:2616-2625.
        doi: 10.1056/NEJMoa0903812

    12. Stamatakis A. 2006. Bioinformatics, 22: 2688-2690.
        doi: 10.1093/bioinformatics/btl446

    13. Tong S, Li Y, Rivailler P, Conrardy C, et al. 2012. Proc Natl Acad Sci U S A, 109: 4269-4274.
        doi: 10.1073/pnas.1116200109

    14. Webster RG, Bean WJ, Gorman OT, et al. 1992. Microbiol Rev, 56:152-179.

    15. Webster RG, Shortridge KF, Kawaoka Y. 1997. FEMS Immunol Med Microbiol, 18: 275-279.
        doi: 10.1111/j.1574-695X.1997.tb01056.x

    16. Xu YF, Cao HB, Liu HY, et al. 2015. Infect Genet Evol, 30: 159-163.
        doi: 10.1016/j.meegid.2014.12.026

  • 加载中

Figures(2) / Tables(2)

Article Metrics

Article views(5972) PDF downloads(27) Cited by()

Related
Proportional views

    A quantitative RT-PCR assay for rapid detection of Eurasian lineage H10 subtype influenza A virus

      Corresponding author: Xiu-Feng Wan, wan@cvm.msstate.edu
    • 1. Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi 39762, USA
    • 2. College of Animal Science and Technology, Jiangxi Agricultural University, Nanchang 330045, China
    • 3. Animal and Plant Health Inspection Service of the US Department of Agriculture, Fort Collins 80526, USA
    • 4. Mississippi Veterinary Research and Diagnostic Laboratory, College of Veterinary Medicine, Mississippi State University, Mississippi 39762, USA

    Abstract: Quantitative RT-PCR (qRT-PCR) has been commonly used for IAV detection in influenza surveillance and disease diagnosis because of its high sensitivity, specificity, and high throughput. A number of HA subtype specific qRT-PCR methods have been developed, including H5, H7, and H9 (Monne et al., 2008). However, there is still lack of a specific qRT-PCR method for detecting the emerging H10N8 IAVs. In this study, a Eurasian-lineage H10 specific qRT-PCR is developed and validated.