-
Amorim JH, Alves RP, Boscardin SB, Ferreira LC (2014) The dengue virus non-structural 1 protein: risks and benefits. Virus Res 181: 53-60
doi: 10.1016/j.virusres.2014.01.001
-
Atkins JF, Loughran G, Bhatt PR, Firth AE, Baranov PV (2016) Ribosomal frameshifting and transcriptional slippage: from genetic steganography and cryptography to adventitious use. Nucl Acids Res 44: 7007-7078
doi: 10.1093/nar/gkw530
-
Balinsky CA, Schmeisser H, Wells AI, Ganesan S, Jin T, Singh K, Zoon KC (2017) IRAV (FLJ11286), an interferon-stimulated gene with antiviral activity against dengue virus, interacts with MOV10. J Virol 91: e01606-16
doi: 10.1128/jvi.01606-16
-
Brakier-Gingras L, Charbonneau J, Butcher SE (2012) Targeting frameshifting in the human immunodeficiency virus. Expert Opin Ther Targets 16: 249-258
doi: 10.1517/14728222.2012.665879
-
Caliskan N, Peske F, Rodnina MV (2015) Changed in translation: mRNA recoding by -1 programmed ribosomal frameshifting. Trends Biochem Sci 40: 265-274
doi: 10.1016/j.tibs.2015.03.006
-
Campbell GL, Hills SL, Fischer M, Jacobson JA, Hoke CH, Hombach JM, Marfin AA, Solomon T, Tsai TF, Tsu VD, Ginsburg AS (2011) Estimated global incidence of Japanese encephalitis: a systematic review. Bull World Health Organ 89: 766-774
doi: 10.2471/BLT.10.085233
-
Chambers TJ, Weir RC, Grakoui A, Mccourt DW, Bazan JF, Fletterick RJ, Rice CM (1990) Evidence that the N-terminal domain of nonstructural protein Ns3 from yellow-fever virus is a serine protease responsible for site-specific cleavages in the viral polyprotein. Proc Natl Acad Sci USA 87: 8898-8902
doi: 10.1073/pnas.87.22.8898
-
Chambers TJ, Droll DA, Jiang X, Wold WS, Nickells JA (2007) JE Nakayama/JE SA14-14-2 virus structural region intertypic viruses: biological properties in the mouse model of neuroinvasive disease. Virology 366: 51-61
doi: 10.1016/j.virol.2007.04.016
-
Chen CJ, Kuo MD, Chien LJ, Hsu SL, Wang YM, Lin JH (1997) RNA-protein interactions: involvement of NS3, NS5, and 3' noncoding regions of Japanese encephalitis virus genomic RNA. J Virol 71: 3466-3473
doi: 10.1128/jvi.71.5.3466-3473.1997
-
Dulude D, Berchiche YA, Gendron K, Brakier-Gingras L, Heveker N (2006) Decreasing the frameshift efficiency translates into an equivalent reduction of the replication of the human immunodeficiency virus type 1. Virology 345: 127-136
doi: 10.1016/j.virol.2005.08.048
-
Firth AE, Atkins JF (2009) A conserved predicted pseudoknot in the NS2A-encoding sequence of West Nile and Japanese encephalitis flaviviruses suggests NS1' may derive from ribosomal frameshifting. Virol J 6: 14
doi: 10.1186/1743-422X-6-14
-
Gregersen LH, Schueler M, Munschauer M, Mastrobuoni G, Chen W, Kempa S, Dieterich C, Landthaler M (2014) MOV10 Is a 5' to 3' RNA helicase contributing to UPF1 mRNA target degradation by translocation along 3' UTRs. Mol Cell 54: 573-585
doi: 10.1016/j.molcel.2014.03.017
-
Hartmann R, Justesen J, Sarkar SN, Sen GC, Yee VC (2003) Crystal structure of the 2'-specific and double-stranded RNA-activated interferon-induced antiviral protein 2'-5'-oligoadenylate synthetase. Mol Cell 12: 1173-1185
doi: 10.1016/S1097-2765(03)00433-7
-
Hung M, Patel P, Davis S, Green SR (1998) Importance of ribosomal frameshifting for human immunodeficiency virus type 1 particle assembly and replication. J Virol 72: 4819-4824
doi: 10.1128/JVI.72.6.4819-4824.1998
-
Impoinvil DE, Baylis M, Solomon T (2013) Japanese encephalitis: on the one health agenda. Curr Top Microbiol Immunol 365: 205-247
doi: 10.1007/82_2012_243
-
Karacostas V, Wolffe EJ, Nagashima K, Gonda MA, Moss B (1993) Overexpression of the HIV-1 gag-pol polyprotein results in intracellular activation of HIV-1 protease and inhibition of assembly and budding of virus-like particles. Virology 193: 661-671
doi: 10.1006/viro.1993.1174
-
Kinast V, Plociennikowska A, Anggakusuma BT, Todt D, Brown RJP, Boldanova T, Zhang Y, Bruggemann Y, Friesland M, Engelmann M, Vieyres G, Broering R, Vondran FWR, Heim MH, Sitek B, Bartenschlager R, Pietschmann T, Steinmann E (2020) C19orf66 is an interferon-induced inhibitor of HCV replication that restricts formation of the viral replication organelle. J Hepatol 73: 549-558
doi: 10.1016/j.jhep.2020.03.047
-
Li HT, Clum S, You SH, Ebner KE, Padmanabhan R (1999) The serine protease and RNA-stimulated nucleoside triphosphatase and RNA helicase functional domains of dengue virus type 2 NS3 converge within a region of 20 amino acids. J Virol 73: 3108-3116
doi: 10.1128/JVI.73.4.3108-3116.1999
-
Lopez AL, Aldaba JG, Roque VG Jr, Tandoc AO Ⅲ, Sy AK, Espino FE, DeQuiroz-Castro M, Jee Y, Ducusin MJ, Fox KK (2015) Epidemiology of Japanese encephalitis in the Philippines: a systematic review. PLoS Negl Trop Dis 9: e0003630
doi: 10.1371/journal.pntd.0003630
-
Makki MS, Heinzel T, Englert C (2008) TSA downregulates Wilms tumor gene 1 (Wt1) expression at multiple levels. Nucl Acids Res 36: 4067-4078
doi: 10.1093/nar/gkn356
-
Melian EB, Hinzman E, Nagasaki T, Firth AE, Wills NM, Nouwens AS, Blitvich BJ, Leung J, Funk A, Atkins JF, Hall R, Khromykh AA (2010) NS1' of flaviviruses in the Japanese encephalitis virus serogroup is a product of ribosomal frameshifting and plays a role in viral neuroinvasiveness. J Virol 84: 1641-1647
doi: 10.1128/JVI.01979-09
-
Mizushima N, Yoshimori T, Levine B (2010) Methods in mammalian autophagy research. Cell 140: 313-326
doi: 10.1016/j.cell.2010.01.028
-
Morita K, Nabeshima T, Buerano C (2015) Japanese encephalitis. Revue Scientifique Et Technique (Int Office Epizoot) 34: 441-452
-
Muller DA, Young PR (2013) The flavivirus NS1 protein: molecular and structural biology, immunology, role in pathogenesis and application as a diagnostic biomarker. Antivir Res 98: 192-208
doi: 10.1016/j.antiviral.2013.03.008
-
Perelygin AA, Zharkikh AA, Scherbik SV, Brinton MA (2006) The mammalian 2'-5' oligoadenylate synthetase gene family: evidence for concerted evolution of paralogous Oas1 genes in Rodentia and Artiodactyla. J Mol Evol 63: 562-576
doi: 10.1007/s00239-006-0073-3
-
Preugschat F, Lenches EM, Strauss JH (1991) Flavivirus enzyme-substrate interactions studied with chimeric proteinases—identification of an intragenic locus important for substrate recognition. J Virol 65: 4749-4758
doi: 10.1128/jvi.65.9.4749-4758.1991
-
Rastogi M, Sharma N, Singh SK (2016) Flavivirus NS1: a multifaceted enigmatic viral protein. Virol J 13: 131
doi: 10.1186/s12985-016-0590-7
-
Rodriguez W, Srivastav K, Muller M (2019) C19ORF66 Broadly escapes virus-induced endonuclease cleavage and restricts Kaposi's sarcoma-associated herpesvirus. J Virol 93: e00373-19
-
Saftig P, Klumperman J (2009) Lysosome biogenesis and lysosomal membrane proteins: trafficking meets function. Nat Rev Mol Cell Biol 10: 623-635
doi: 10.1038/nrm2745
-
Schmeisser H, Mejido J, Balinsky CA, Morrow AN, Clark CR, Zhao T, Zoon KC (2010) Identification of alpha interferon-induced genes associated with antiviral activity in Daudi cells and characterization of IFIT3 as a novel antiviral gene. J Virol 84: 10671-10680
doi: 10.1128/JVI.00818-10
-
Schoggins JW, Wilson SJ, Panis M, Murphy MY, Jones CT, Bieniasz P, Rice CM (2011) A diverse range of gene products are effectors of the type I interferon antiviral response. Nature 472: 481-485
doi: 10.1038/nature09907
-
Shehu-Xhilaga M, Crowe SM, Mak J (2001) Maintenance of the Gag/Gag-Pol ratio is important for human immunodeficiency virus type 1 RNA dimerization and viral infectivity. J Virol 75: 1834-1841
doi: 10.1128/JVI.75.4.1834-1841.2001
-
Singh MK, Scott TF, LaFramboise WA, Hu FZ, Post JC, Ehrlich GD (2007) Gene expression changes in peripheral blood mononuclear cells from multiple sclerosis patients undergoing beta-interferon therapy. J Neurol Sci 258: 52-59
doi: 10.1016/j.jns.2007.02.034
-
Solomon T, Vaughn DW (2002) Pathogenesis and clinical features of Japanese encephalitis and West Nile virus infections. Jpn Encephalitis West Nile Viruses 267: 171-194
doi: 10.1007/978-3-642-59403-8_9
-
Sun J, Yu Y, Deubel V (2012) Japanese encephalitis virus NS1' protein depends on pseudoknot secondary structure and is cleaved by caspase during virus infection and cell apoptosis. Microbes Infect 14: 930-940
doi: 10.1016/j.micinf.2012.03.007
-
Suzuki Y, Chin WX, Han Q, Ichiyama K, Lee CH, Eyo ZW, Ebina H, Takahashi H, Takahashi C, Tan BH, Hishiki T, Ohba K, Matsuyama T, Koyanagi Y, Tan YJ, Sawasaki T, Chu JJ, Vasudevan SG, Sano K, Yamamoto N (2016) Characterization of RyDEN (C19orf66) as an interferon-stimulated cellular inhibitor against dengue virus replication. PLoS Pathog 12: e1005357
doi: 10.1371/journal.ppat.1005357
-
Taylor MW, Tsukahara T, McClintick JN, Edenberg HJ, Kwo P (2008) Cyclic changes in gene expression induced by Peg-interferon alfa-2b plus ribavirin in peripheral blood monocytes (PBMC) of hepatitis C patients during the first 10 weeks of treatment. J Transl Med 6: 66
doi: 10.1186/1479-5876-6-66
-
Unni SK, Ruzek D, Chhatbar C, Mishra R, Johri MK, Singh SK (2011) Japanese encephalitis virus: from genome to infectome. Microbes Infect 13: 312-321
doi: 10.1016/j.micinf.2011.01.002
-
Utama A, Shimizu H, Morikawa S, Hasebe F, Morita K, Igarashi A, Hatsu M, Takamizawa K, Miyamura T (2000) Identification and characterization of the RNA helicase activity of Japanese encephalitis virus NS3 protein. FEBS Lett 465: 74-78
doi: 10.1016/S0014-5793(99)01705-6
-
van den Hurk AF, Ritchie SA, Mackenzie JS (2009) Ecology and geographical expansion of Japanese encephalitis virus. Annu Rev Entomol 54: 17-35
doi: 10.1146/annurev.ento.54.110807.090510
-
Wang J, Li X, Gu J, Fan Y, Zhao P, Cao R, Chen P (2015) The A66G back mutation in NS2A of JEV SA14-14-2 strain contributes to production of NS1' protein and the secreted NS1' can be used for diagnostic biomarker for virulent virus infection. Infect Genet Evol 36: 116-125
doi: 10.1016/j.meegid.2015.09.013
-
Wang X, Xuan Y, Han Y, Ding X, Ye K, Yang F, Gao P, Goff SP, Gao G (2019) Regulation of HIV-1 Gag-Pol expression by shiftless, an inhibitor of programmed -1 ribosomal frameshifting. Cell 176: 625-635. e14
doi: 10.1016/j.cell.2018.12.030
-
Wu Y, Yang X, Yao Z, Dong X, Zhang D, Hu Y, Zhang S, Lin J, Chen J, An S, Ye H, Zhang S, Qiu Z, He Z, Huang M, Wei G, Zhu X (2020) C19orf66 interrupts Zika virus replication by inducing lysosomal degradation of viral NS3. PLoS Negl Trop Dis 14: e0008083
doi: 10.1371/journal.pntd.0008083
-
Ye Q, Li XF, Zhao H, Li SH, Deng YQ, Cao RY, Song KY, Wang HJ, Hua RH, Yu YX, Zhou X, Qin ED, Qin CF (2012) A single nucleotide mutation in NS2A of Japanese encephalitis-live vaccine virus (SA14-14-2) ablates NS1' formation and contributes to attenuation. J Gen Virol 93: 1959-1964
doi: 10.1099/vir.0.043844-0
-
Young LB, Melian EB, Khromykh AA (2013) NS1' colocalizes with NS1 and can substitute for NS1 in West Nile virus replication. J Virol 87: 9384-9390
doi: 10.1128/JVI.01101-13
-
Yun SI, Song BH, Polejaeva IA, Davies CJ, White KL, Lee YM (2016) Comparison of the live-attenuated Japanese encephalitis vaccine SA14-14-2 strain with its pre-attenuated virulent parent SA14 strain: similarities and differences in vitro and in vivo. J Gen Virol 97: 2575-2591
doi: 10.1099/jgv.0.000574
-
Zheng S, Zhu D, Lian X, Liu WT, Cao RB, Chen PY (2016) Porcine 2', 5'-oligoadenylate synthetases inhibit Japanese encephalitis virus replication in vitro. J Med Virol 88: 760-768
doi: 10.1002/jmv.24397
-
Zhou D, Li Q, Jia F, Zhang L, Wan S, Li Y, Song Y, Chen H, Cao S, Ye J (2020) The Japanese encephalitis virus NS1' protein inhibits type I IFN production by targeting MAVS. J Immunol 204: 1287-1298
doi: 10.4049/jimmunol.1900946
-
Zimmerer JM, Lesinski GB, Ruppert AS, Radmacher MD, Noble C, Kendra K, Walker MJ, Carson WE 3rd (2008) Gene expression profiling reveals similarities between the in vitro and in vivo responses of immune effector cells to IFN-αlpha. Clin Cancer Res 14: 5900-5906
doi: 10.1158/1078-0432.CCR-08-0846