Genetic characterization of rarely reported GII.3[P25] norovirus strain detected in patients with acute gastroenteritis in Huzhou, China, 2021

Abstract

Electronic Supplementary Material

10.1016j.virs.2023.06.008-ESM.docx

References

1. Ai, J., M. Zhang, F. Jin, and Z. Xie. 2021. Recombinant GII.4[P31] Was Predominant Norovirus Circulating in Beijing Area, China, 2018-2020. Virologica Sinica 36:1245-1247.
   

2. Ao, Y., J. Wang, H. Ling, Y. He, X. Dong, X. Wang, J. Peng, H. Zhang, M. Jin, and Z. Duan. 2017. Norovirus GII.P16/GII.2-Associated Gastroenteritis, China, 2016. Emerging infectious diseases 23:1172-1175.
   

3. Bok, K., E. J. Abente, M. Realpe-Quintero, T. Mitra, S. V. Sosnovtsev, A. Z. Kapikian, and K. Y. Green. 2009. Evolutionary dynamics of GII.4 noroviruses over a 34-year period. Journal of virology 83:11890-11901.
   

4. Boon, D., J. E. Mahar, E. J. Abente, C. D. Kirkwood, R. H. Purcell, A. Z. Kapikian, K. Y. Green, and K. Bok. 2011. Comparative evolution of GII.3 and GII.4 norovirus over a 31-year period. Journal of virology 85:8656-8666.
   

5. Bull, R. A., M. M. Tanaka, and P. A. White. 2007. Norovirus recombination. The Journal of general virology 88:3347-3359.
   

6. Bull, R. A., G. S. Hansman, L. E. Clancy, M. M. Tanaka, W. D. Rawlinson, and P. A. White. 2005. Norovirus recombination in ORF1/ORF2 overlap. Emerging infectious diseases 11:1079-1085.
   

7. Chen, L., D. Xu, X. Wu, G. Liu, and L. Ji. 2020. An increasing prevalence of non-GII.4 norovirus genotypes in acute gastroenteritis outbreaks in Huzhou, China, 2014-2018. Archives of virology 165:1121-1128.
   

8. Chhabra, P., M. de Graaf, G. I. Parra, M. C. Chan, K. Green, V. Martella, Q. Wang, P. A. White, K. Katayama, H. Vennema, M. P. G. Koopmans, and J. Vinjé. 2019. Updated classification of norovirus genogroups and genotypes. The Journal of general virology 100:1393-1406.
   

9. Glass, R. I., U. D. Parashar, and M. K. Estes. 2009. Norovirus gastroenteritis. The New England journal of medicine 361:1776-1785.
   

10. Hoa Tran, T. N., E. Trainor, T. Nakagomi, N. A. Cunliffe, and O. Nakagomi. 2013. Molecular epidemiology of noroviruses associated with acute sporadic gastroenteritis in children:global distribution of genogroups, genotypes and GII.4 variants. Journal of clinical virology:the official publication of the Pan American Society for Clinical Virology 56:185-193.
    

11. Kroneman, A., E. Vega, H. Vennema, J. Vinjé, P. A. White, G. Hansman, K. Green, V. Martella, K. Katayama, and M. Koopmans. 2013. Proposal for a unified norovirus nomenclature and genotyping. Archives of virology 158:2059-2068.
    

12. Li, J., L. Zhang, W. Zou, Z. Yang, J. Zhan, and J. Cheng. 2023. Epidemiology and genetic diversity of norovirus GII genogroups among children in Hubei, China, 2017-2019. Virologica Sinica 38:351-362.
    

13. Mahar, J. E., K. Bok, K. Y. Green, and C. D. Kirkwood. 2013. The importance of intergenic recombination in norovirus GII.3 evolution. Journal of virology 87:3687-3698.
    

14. Mathijs, E., S. Denayer, L. Palmeira, N. Botteldoorn, A. Scipioni, A. Vanderplasschen, E. Thiry, and K. Dierick. 2011. Novel norovirus recombinants and of GII.4 sub-lineages associated with outbreaks between 2006 and 2010 in Belgium. Virology journal 8:310.
    

15. Medici, M. C., F. Tummolo, V. Martella, G. M. Giammanco, S. De Grazia, M. C. Arcangeletti, F. De Conto, C. Chezzi, and A. Calderaro. 2014. Novel recombinant GII.P16_GII.13 and GII.P16_GII.3 norovirus strains in Italy. Virus research 188:142-145.
    

16. Niendorf, S., S. Jacobsen, M. Faber, A. M. Eis-Hübinger, J. Hofmann, O. Zimmermann, M. Höhne, and C. T. Bock. 2017. Steep rise in norovirus cases and emergence of a new recombinant strain GII.P16-GII.2, Germany, winter 2016. Euro surveillance:bulletin Europeen sur les maladies transmissibles=European communicable disease bulletin 22.
    

17. Prasad, B. V., M. E. Hardy, T. Dokland, J. Bella, M. G. Rossmann, and M. K. Estes. 1999. X-ray crystallographic structure of the Norwalk virus capsid. Science (New York, N.Y.) 286:287-290.
    

18. Saito, M., H. Tsukagoshi, H. Ishigaki, J. Aso, H. Ishii, K. Okayama, A. Ryo, T. Ishioka, M. Kuroda, N. Saruki, K. Katayama, and H. Kimura. 2020. Molecular evolution of the capsid (VP1) region in human norovirus genogroup II genotype 3. Heliyon 6:e03835.
    

19. Thorne, L. G., and I. G. Goodfellow. 2014. Norovirus gene expression and replication. The Journal of general virology 95:278-291.
    

20. Vinje, J. 2015. Advances in laboratory methods for detection and typing of norovirus. Journal of clinical microbiology 53:373-381.
    

21. Vongpunsawad, S., B. V. Venkataram Prasad, and M. K. Estes. 2013. Norwalk Virus Minor Capsid Protein VP2 Associates within the VP1 Shell Domain. Journal of virology 87:4818-4825.
    

22. White, P. A. 2014. Evolution of norovirus. Clinical microbiology and infection:the official publication of the European Society of Clinical Microbiology and Infectious Diseases 20:741-745.
    

23. Yang, Y., M. Xia, L. Wang, S. Arumugam, Y. Wang, X. Ou, C. Wang, X. Jiang, M. Tan, Y. Chen, and X. Li. 2019. Structural basis of host ligand specificity change of GII porcine noroviruses from their closely related GII human noroviruses. Emerging microbes & infections 8:1642-1657.
    

24. Yi, Y., S. Wang, X. Wang, P. Xiong, Q. Liu, C. Zhang, F. Yin, and Z. Huang. 2021. Identification of Human Norovirus GII.3 Blockade Antibody Epitopes. Viruses 13.
    

Proportional views