. doi: 10.1016/j.virs.2023.09.002
Citation: Jinfu Sun, Jiaying Li, Liming Li, Haixiao Yu, Ping Ma, Yingnan Wang, Jinqi Zhu, Zezhong Feng, Changchun Tu. Classical swine fever virus NS5A protein antagonizes innate immune response by inhibiting the NF-κB signaling .VIROLOGICA SINICA, 2023, 38(6) : 900-910.  http://dx.doi.org/10.1016/j.virs.2023.09.002

猪瘟病毒NS5A蛋白通过抑制NF-κB信号对抗宿主天然免疫反应

  • 猪瘟病毒NS5A蛋白是一个多功能蛋白,参与病毒基因组复制、蛋白翻译、病毒粒子装配并调控细胞信号。研究显示NS5A抑制NF-κB信号,但是抑制NF-κB信号的分子机制尚未阐明。本研究证实NS5A与NEMO相互作用并诱导NEMO K27连接的多聚泛素化和蛋白酶体的降解。此外,NEMO锌指域是其与NS5A相互作用必需的,NEMO锌指域是NEMO K63多聚泛素化进而激活NF-κB信号必需区域。NEMO K63多聚泛素化分析显示,NS5A抑制NEMO K63多聚泛素化。这些数据表明,猪瘟病毒NS5A蛋白通过介导NEMO蛋白酶体的降解及阻碍NEMO K63多聚泛素化抑制TNF-α诱导的NF-κB信号。

Classical swine fever virus NS5A protein antagonizes innate immune response by inhibiting the NF-κB signaling

  • The NS5A non-structural protein of classical swine fever virus (CSFV) is a multifunctional protein involved in viral genomic replication, protein translation, assembly of infectious virus particles, and regulation of cellular signaling pathways. Previous report showed that NS5A inhibited nuclear factor kappa B (NF-κB) signaling induced by poly(I:C); however, the mechanism involved has not been elucidated. Here, we reported that NS5A directly interacted with NF-κB essential modulator (NEMO), a regulatory subunit of the IκB kinase (IKK) complex, to inhibit the NF-κB signaling pathway. Further investigations showed that the zinc finger domain of NEMO and the aa 126–250 segment of NS5A are essential for the interaction between NEMO and NS5A. Mechanistic analysis revealed that NS5A mediated the proteasomal degradation of NEMO. Ubiquitination assay showed that NS5A induced the K27-linked but not the K48-linked polyubiquitination of NEMO for proteasomal degradation. In addition, NS5A blocked the K63-linked polyubiquitination of NEMO, thus inhibiting IKK phosphorylation, IκBα degradation, and NF-κB activation. These findings revealed a novel mechanism by which CSFV inhibits host innate immunity, which might guide the drug design against CSFV in the future.

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    1. Alvarez, S.E., Harikumar, K.B., Hait, N.C., Allegood, J., Strub, G.M., Kim, E.Y., Maceyka, M., Jiang, H., Luo, C., Kordula, T., Milstien, S., Spiegel, S., 2010. Sphingosine-1- phosphate is a missing cofactor for the E3 ubiquitin ligase TRAF2. Nature 465, 1084-1088.

    2. Ashida, H., Kim, M., Schmidt-Supprian, M., Ma, A., Ogawa, M., Sasakawa, C., 2010. A bacterial E3 ubiquitin ligase IpaH9.8 targets NEMO/IKKgamma to dampen the host NF-kappaB-mediated inflammatory response. Nat. Cell Biol. 12, 66-73.

    3. Bertrand, M.J., Milutinovic, S., Dickson, K.M., Ho, W.C., Boudreault, A., Durkin, J., Gillard, J.W., Jaquith, J.B., Morris, S.J., Barker, P.A., 2008. cIAP1 and cIAP2 facilitate cancer cell survival by functioning as E3 ligases that promote RIP1 ubiquitination. Mol. Cell 30, 689-700.

    4. Biswas, S., Shisler, J.L., 2017. Molluscum contagiosum virus MC159 abrogates cIAP1-NEMO interactions and inhibits NEMO polyubiquitination. J. Virol. 91, e00276-17.

    5. Brady, G., Haas, D.A., Farrell, P.J., Pichlmair, A., Bowie, A.G., 2017. Molluscum Contagiosum Virus Protein MC005 Inhibits NF-κB Activation by Targeting NEMO-Regulated IκB Kinase Activation. J. Virol. 91, e00545-17.

    6. Chen, Y., Xiao, J., Xiao, J., Sheng, C., Wang, J., Jia, L., Zhi, Y., Li, G., Chen, J., Xiao, M., 2012. Classical swine fever virus NS5A regulates viral RNA replication through binding to NS5B and 3'-UTR. Virology 432, 376-388.

    7. Chen, L.J., Dong, X.Y., Zhao, M.Q., Shen, H.Y., Wang, J.Y., Pei, J.J., Liu, W.J., Luo, Y.W., Ju, C.M., Chen, J.D., 2012a. Classical swine fever virus failed to activate nuclear factor –kappa b signaling pathway both in vitro and in vivo. Virol. J. 9, 293.

    8. Chiaravalli, J., Fontan, E., Fsihi, H., Coic, Y.M., Baleux, F., Véron, M., Agou, F., 2011. Direct inhibition of NF-κB activation by peptide targeting the NOA ubiquitin binding domain of NEMO. Biochem. Pharmacol. 82, 1163-1174.

    9. Ciechanover, A., 2005. Proteolysis: from the lysosome to ubiquitin and the proteasome. Nat. Rev. Mol. Cell Biol. 6, 79–87.

    10. Cordier, F., Grubisha, O., Traincard, F., Véron, M., Delepierre, M., Agou, F., 2009. The zinc finger of NEMO is a functional ubiquitin-binding domain. J. Biol. Chem. 284, 2902-2907.

    11. De Falco, F., Di Giovanni, C., Cerchia, C., De Stefano, D., Capuozzo, A., Irace, C., Iuvone, T., Santamaria, R., Carnuccio, R., Lavecchia, A., 2016. Novel non-peptide small molecules preventing IKKβ/NEMO association inhibit NF-κB activation in LPS-stimulated J774 macrophages. Biochem. Pharmacol. 104, 83-94.

    12. Dev, A., lyer, S., Razani, B., Cheng, G., 2011. NF-κB and innate immunity. Curr. Top. Microbiol. Immunol. 349, 115-143.

    13. Dong, X.Y., Liu, W.J., Zhao, M.Q., Wang, J.Y., Pei, J.J., Luo, Y.W., Ju, C.M., Chen, J.D., 2013. Classical swine fever virus triggers RIG-I and MDA5-dependent signaling pathway to IRF-3 and NF-κB activation to promote secretion of interferon and inflammatory cytokines in porcine alveolar macrophages. Virol. J. 10, 286.

    14. Dong, X.Y., Tang, S.Q., 2016. Classical swine fever NS5A protein changed inflammatory cytokine secretion in porcine alveolar macrophages by inhibiting the NF-kB signaling pathway. Virol. J. 13, 101.

    15. Ea, C.K., Deng, L., Xia, Z.P., Pineda, G., Chen, Z.J., 2006. Activation of IKK by TNFalpha requires site-specific ubiquitination of RIP1 and polyubiquitin binding by NEMO. Mol. Cell 22, 245-257.

    16. Fan, Y., Yu, Y., Shi, Y., Sun, W., Xie, M., Ge, N., Mao, R., Chang, A., Xu, G., Schneider, M.D., Zhang, H., Fu, S., Qin, J., Yang, J., 2010. Lysine 63-linked polyubiquitination of TAK1 at lysine 158 is required for tumor necrosis factor alpha- and interleukin-1beta-induced IKK/NF-kappaB and JNK/AP-1 activation. J. Biol. Chem. 285, 5347-5360.

    17. Grassmann, C.W., Isken, O., Tautz, N., Behrens, SE., 2001. Genetic analysis of the pestivirus nonstructural coding region: defects in the NS5A unit can be complemented in trans. J. Virol. 75, 7791-802

    18. Grice, G.L., Nathan, J.A., 2016. The recognition of ubiquitinated proteins by the proteasome. Cell Mol. Life Sci. 18, 3497-3506.

    19. Hadian, K., Griesbach, R.A., Dornauer, S., Wanger, T.M., Nagel, D., Metlitzky, M., Beisker, W., Schmidt-Supprian, M., Krappmann, D., 2011. NF-κB essential modulator (NEMO) interaction with linear and lys-63 ubiquitin chains contributes to NF-κB activation. J. Biol. Chem. 286, 26107-26117.

    20. Huang, C., Zhang, Q., Guo, X.K., Yu, Z.B., Xu, A.T., Tang, J., Feng, W.H., 2014. Porcine reproductive and respiratory syndrome virus nonstructural protein 4 antagonizes beta interferon expression by targeting the NF-κB essential modulator. J. Virol. 88, 10934-10945.

    21. Iwasaki, A., Medzhitov, R., 2010. Regulation of adaptive immunity by the innate immune system. Science 327, 291-295.

    22. Jun, J.C., Kertesy, S., Jones, M.B., Marinis, J.M., Cobb, B.A., Tigno-Aranjuez, J.T., Abbott, D.W., 2013. Innate immune-directed NF-κB signaling requires site-specific NEMO ubiquitination. Cell Rep. 4, 352-361.

    23. Le Negrate, G., 2012. Viral interference with innate immunity by preventing NF-kB activity. Cell Microbiol. 14, 168-181.

    24. Li, S., Wang, J., He, W.R., Feng, S., Li, Y., Wang, X., Liao, Y., Qin, H.Y., Li, L.F., Dong, H., Sun, Y., Luo, Y., Qiu, H.J., 2015. Thioredoxin 2 is a novel E2-Interacting protein that inhibits the replication of classical swine fever virus. J. Virol. 89, 8510-8524.

    25. Liu, X., Wang, X., Wang, Q., Luo, M., Guo, H., Gong, W., Tu, C., Sun, J., 2018. The eukaryotic translation initiation factor 3 subunit E binds to classical swine fever virus NS5A and facilitates viral replication. Virology 515, 11-20.

    26. May, M.J., D'Acquisto, F., Madge, L.A., Glöckner, J., Pober, J.S., Ghosh, S., 2000. Selective inhibition of NF-kappaB activation by a peptide that blocks the interaction of NEMO with the IkappaB kinase complex. Science 289, 1550-1554.

    27. Muñoz-González, S., Ruggli, N., Rosell, R., Pérez, L.J., Frías-Leuporeau, M.T., Fraile, L., Montoya, M., Cordoba, L., Domingo, M., Ehrensperger, F., Summerfield, A., Ganges, L., 2015. Postnatal persistent infection with classical swine fever virus and its immunological implications. PLoS One, 10, e0125692.

    28. Napetschnig, J., Wu, H., 2013. Molecular basis of NF-κB signaling. Annu. Rev. Biophys. 42, 443-468.

    29. Ohtake, F., Tsuchiya, H., Saeki, Y., Tanaka, K., 2018. K63 ubiquitylation triggers proteasomal degradation by seeding branched ubiquitin chains. Proc. Natl. Acad. Sci. USA., 115, 1401-1408.

    30. Ni, C.Y., Wu, Z.H., Florence, W.C., Parekh, V.V., Arrate, M.P., Pierce, S., Schweitzer, B., Van Kaer, L., Joyce, S., Miyamoto, S., Ballard, D.W., Oltz, E.M. 2008. Cutting edge: K63-linked polyubiquitination of NEMO modulates TLR signaling and inflammation in vivo. J. Immunol. 180, 7107-7111.

    31. Sapay, N., Montserret, R., Chipot, C., Brass, V., Moradpour, D., Deléage, G., Penin, F., 2006. NMR structure and molecular dynamics of the in-plane membrane anchor of nonstructural protein 5A from bovine viral diarrhea virus. Biochemistry 45, 2221-2233.

    32. Sheng, C., Chen, Y., Xiao, J., Wang, J., Li, G., Chen, J., Xiao, M., 2012a. Classical swine fever virus NS5A protein interacts with 3'-untranslated region and regulates viral RNA synthesis. Virus Res. 163, 636-643.

    33. Sheng, C., Kou, S., Jiang, Q., Zhou, C., Xiao, J., Li, J., Chen, B., Zhao, Y., Wang, Y., Xiao, M., 2014. Characterization of the C-terminal sequence of NS5A necessary for the assembly and production of classical swine fever virus infectious particles. Res. Vet. Sci. 97, 449-454.

    34. Sheng, C., Liu, X., Jiang, Q., Xu, B., Zhou, C., Wang, Y., Chen, J., Xiao, M., 2015. Annexin A2 is involved in the production of classical swine fever virus infectious particles. J. Gen. Virol. 96, 1027-1032.

    35. Sheng, C., Zhu, Z., Yu, J., Wan, L., Wang, Y., Chen, J., Gu, F., Xiao, M., 2010. Characterization of NS3, NS5A and NS5B of classical swine fever virus through mutation and complementation analysis. Vet. Microbiol. 140, 72-80.

    36. Takaesu, G., Surabhi, R.M., Park, K.J., Ninomiya-Tsuji, J., Matsumoto, K., Gaynor, R.B., 2003. TAK1 is critical for IkappaB kinase-mediated activation of the NF-kappaB pathway. J. Mol. Biol. 326, 105-115.

    37. Tang, E.D., Wang, C.Y., Xiong, Y., Guan, K.L., 2003. A role for NF-kappaB essential modifier/IkappaB kinase-gamma (NEMO/IKKgamma) ubiquitination in the activation of the IkappaB kinase complex by tumor necrosis factor-alpha. J. Biol. Chem. 278, 37297-37305.

    38. Tautz, N., Tews, B.A., Meyers, G., 2015. The molecular biology of pestiviruses. Adv. Virus Res. 93, 47-160.

    39. Tellinghuisen, T.L., Paulson, M.S., Rice, C.M., 2006. The NS5A protein of bovine viral diarrhea virus contains an essential zinc-binding site similar to that of the hepatitis C virus NS5A protein. J. Virol. 80, 7450-7458.

    40. Wajant, H., Scheurich, P., 2011. TNFR1-induced activation of the classical NF-κB pathway. FEBS J. 278, 862-876.

    41. Wang, C., Deng, L., Hong, M., Akkaraju, G.R., Inoue, J., Chen, Z.J., 2001. TAK1 is a ubiquitin-dependent kinase of MKK and IKK. Nature 412, 346-351.

    42. Wang, D., Fang, L., Li, K., Zhong, H., Fan, J., Ouyang, C., Zhang, H., Duan, E., Luo, R., Zhang, Z., Liu, X., Chen, H., Xiao, S., 2012. Foot-and-mouth disease virus 3C protease cleaves NEMO to impair innate immune signaling. J. Virol. 86, 9311-9322.

    43. Wang, D., Fang, L., Shi, Y., Zhang, H., Gao, L., Peng, G., Chen, H., Li, K., Xiao, S., 2015. Porcine Epidemic Diarrhea Virus 3C-Like Protease Regulates Its Interferon Antagonism by Cleaving NEMO. J. Virol. 90, 2090-2101.

    44. Wang, X., Robbin, J., 2014. proteasomical and lysosomical protein degradation and heart disease. J. Mol. Cell Cardiol. 71, 16-24.

    45. Wu, J., Shi, Y., Pan, X., Wu, S., Hou, R., Zhang, Y., Zhong, T., Tang, H., Du, W., Wang, L., Wo, J., Mu, J., Qiu, Y., Yang, K., Zhang, L.K., Ye, B.C., Qi, N., 2021. SARS-CoV-2 ORF9b inhibits RIG-I-MAVS antiviral signaling by interrupting K63-linked ubiquitination of NEMO. Cell Rep. 34, 108761.

    46. Xu, P., Duong, D.M., Seyfried, N.T., Cheng, D., Xie, Y., Robert, J., Rush, J., Hochstrasser, M., Finley, D., Peng, J., 2009. Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation. Cell 137, 133-145.

    47. Yamaoka, S., Courtois, G., Bessia, C., Whiteside, S.T., Weil, R., Agou, F., Kirk, H.E., Kay, R.J., Israël, A., 1998. Complementation cloning of NEMO, a component of the IκB kinase complex essential for NF-κB activation. Cell 93, 1231-1240.

    48. Zhang, L., Zhao, D., Jin, M., Song, M., Liu, S., Guo, K., Zhang, Y., 2020. Rab18 binds to classical swine fever virus NS5A and mediates viral replication and assembly in swine umbilical vein endothelial cells. Virulence 11, 489-501.

    49. Zhao, J., Zhang, L., Mu, X., Doebelin, C., Nguyen, W., Wallace, C., Reay, D.P., McGowan, S.J., Corvo, L., Clemens, P.R., Wilson, G.M., Watkins, S.C., Solt, L.A., Cameron, M.D., Huard, J., Niedernhofer, L.J., Kamenecka, T.M., Robbins, P.D., 2018. Development of novel NEMO-binding domain mimetics for inhibiting IKK /NF-κB activation. PLoS. Biol., 16, e2004663.

    50. Zhuo, Y., Guo, Z., Ba, T., Zhang, C., He, L., Zeng, C., Dai, H., 2021. African Swine Fever Virus MGF360-12L Inhibits Type I Interferon Production by Blocking the Interaction of Importin α and NF-κB Signaling Pathway. Virol Sin. 36:176-186.

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    Classical swine fever virus NS5A protein antagonizes innate immune response by inhibiting the NF-κB signaling

      Corresponding author: Jinfu Sun, sunjinfu@mail.neu.edu.cn
      Corresponding author: Changchun Tu, changchun_tu@hotmail.com
    • a. Key Laboratory of Bioresource Research and Development of Liaoning Province, College of Life and Health Sciences, Northeastern University, Shenyang, 110169, China;
    • b. Changchun Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Changchun, 130122, China;
    • c. Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Disease and Zoonoses, Yangzhou University, Yangzhou, 225009, China

    Abstract: The NS5A non-structural protein of classical swine fever virus (CSFV) is a multifunctional protein involved in viral genomic replication, protein translation, assembly of infectious virus particles, and regulation of cellular signaling pathways. Previous report showed that NS5A inhibited nuclear factor kappa B (NF-κB) signaling induced by poly(I:C); however, the mechanism involved has not been elucidated. Here, we reported that NS5A directly interacted with NF-κB essential modulator (NEMO), a regulatory subunit of the IκB kinase (IKK) complex, to inhibit the NF-κB signaling pathway. Further investigations showed that the zinc finger domain of NEMO and the aa 126–250 segment of NS5A are essential for the interaction between NEMO and NS5A. Mechanistic analysis revealed that NS5A mediated the proteasomal degradation of NEMO. Ubiquitination assay showed that NS5A induced the K27-linked but not the K48-linked polyubiquitination of NEMO for proteasomal degradation. In addition, NS5A blocked the K63-linked polyubiquitination of NEMO, thus inhibiting IKK phosphorylation, IκBα degradation, and NF-κB activation. These findings revealed a novel mechanism by which CSFV inhibits host innate immunity, which might guide the drug design against CSFV in the future.

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