FANG Fang, PAN Wei, CI Zhong-Tian, SONG Yan-Bin and ZHU Shi-Ying. Sequence characterization of hypervariable region 1 of the putative envelope protein 2 in Chinese HCV isolates[J]. Virologica Sinica, 1998, 13(1).
Citation: FANG Fang, PAN Wei, CI Zhong-Tian, SONG Yan-Bin, ZHU Shi-Ying. Sequence characterization of hypervariable region 1 of the putative envelope protein 2 in Chinese HCV isolates .VIROLOGICA SINICA, 1998, 13(1) : 39.

我国丙型肝炎病毒囊膜蛋白E_2高变区1的序列特征

  • 对23例国内献血员、血透析及肝炎病人血清用反转录巢式PCR技术扩增了HCVRNA囊膜蛋白2基因的cDNA片段,并进行了序列测定。结果表明23例病人HCVE2/NS1N末端的核苷酸及氨基酸序列呈现多样性,高变区1(HVR1)位于核苷酸第1459~1559位,氨基酸第384~410位;我国HCV株HVR127个氨基酸中有15个位置氨基酸相对稳定,氨基酸组成与分布均与Sekiya报道的166个HCV株的不同。结果提示,研究我国HCV株HVR1的序列特征有助于HCV的流行病学研究,对研制适用于我国的抗体诊断试剂盒及进行疫苗研究均有重要的意义。

Sequence characterization of hypervariable region 1 of the putative envelope protein 2 in Chinese HCV isolates

  • Twenty three serum samples from blood donor, hemodialysis and hepatitis patients were collected. Using reverse transcription nested polymerase chain reaction method (RT nested PCR),the cDNA fragments of the putative envelope protein 2 (E 2/NS 1) of HCV RNA were amplified and then sequenced. Nucleotied and amino acid sequence analysis showed marked heterogeneity among isolates from 23 patients at the N terminus of E 2/NS 1.The extended sequence analysis comfirmed that the hypervariable region one (HVR 1) is located at the positions 1459~1559 in nucleotide sequence,and 384~410 in amino acid sequence. It was found that 15 amino acids of 27 amino acids of HVR 1 in Chinese HCV isolates were stable, and the composition and distribution of amino acid of HVR 1 were much different from 166 isolates reported by Sekiya. It is suggested that studying the characterization of HVR 1 HCV Chinese isolates would be helpful for investigating geographical distribution of HCV, and researching diagnosis method and vacc.

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    Sequence characterization of hypervariable region 1 of the putative envelope protein 2 in Chinese HCV isolates

    • 1. Sequence Characterization of Hypervariable Region 1 of the Putative Envelope Protein 2 in Chinese HCV Isolates

    Abstract: Twenty three serum samples from blood donor, hemodialysis and hepatitis patients were collected. Using reverse transcription nested polymerase chain reaction method (RT nested PCR),the cDNA fragments of the putative envelope protein 2 (E 2/NS 1) of HCV RNA were amplified and then sequenced. Nucleotied and amino acid sequence analysis showed marked heterogeneity among isolates from 23 patients at the N terminus of E 2/NS 1.The extended sequence analysis comfirmed that the hypervariable region one (HVR 1) is located at the positions 1459~1559 in nucleotide sequence,and 384~410 in amino acid sequence. It was found that 15 amino acids of 27 amino acids of HVR 1 in Chinese HCV isolates were stable, and the composition and distribution of amino acid of HVR 1 were much different from 166 isolates reported by Sekiya. It is suggested that studying the characterization of HVR 1 HCV Chinese isolates would be helpful for investigating geographical distribution of HCV, and researching diagnosis method and vacc.

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